Detail information of BGIOSGA023968_circ_g.1


General Information
CircRNA Name BGIOSGA023968_circ_g.1
ID in PlantcircBase osi_circ_017295
Alias Chr07:24676538_24681372(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr7: 22389481-22394316  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA023968
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA023968_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-TA
Number of exons covered BGIOSGA023968-TA:12
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTCTTTCTGACCTTGATCACTGATACAAATTAGAAAGGAAATTAAAATTAGCATGTACTTACT
AGGTGAACTTTTTCTGGCTTTGAACCAAGCGATTTTcatcttttcctcgtctgcttgcagctct
tgttttagtatctggcgtttgtttcacttgccggcttggatttgatggtttagagtcctgtgag
cagatttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATCTTTTCCTCGTCTGCTTGCAGCTCTTGTTTTAGTATCTGGCGTTTGTTTCACTTGCCGGCT
TGGATTTGATGGTTTAGAGTCCTGTGAGCAGATTTTGAATTTTATAAATACGATGGATATAAGA
GGTTGGCTGAAGTTGCCAAAGATACAGGTCAAGGATCAATACATTTTTACTAGCCAACTGTGCT
TTAGACTTTTCTGCTTCTGCCTCTTTTTCAGCCCTTTTCTTATCGAGCTCAGCTTGCTTGCGGT
TCTCTTCATGTGCTTTCCGAAACATTGTTACAAATGTTAAGAGGGTGGAGATAACTGCAACATC
ATGATCAACATAAGAGTTAAGCAACATACCAAAACAAGCAAACACATATGTTGATGATAAAAAA
TGCAGAAATAAGATATGCTCAATCAGCTGCAAACTACAGAAAATGATTTATCCTAAATTGTTTC
TTTGCAAGGTATTACATATTTTTGGGTTGAAATATTTTAAATAAGAATGATTTTCATGATAATG
TGTTTGTGCTTATAGTGGGGGGTGCTCACACGACTGACAGTATCTTGATCCTTGACAGGTACTC
GGAAAAAGAAAATGCTGAATGCACAACCTTAGAAATAAGTCACATTGATCATAAATATTCTTAC
CTTGCTCAAAAGGGCAGCGGACAGGATCTTCGCCGAAATATTTAATCAGTGCATCAGCCTTTTT
TCCCTGACAAAATAATGCAACAAATAATCAAGGCCAGAAGGAATGTGGGTTAATAGCATGCATT
CCTCTTCATATAAGAAAACAAAAACATACCACTTCAGAAAATAATGAAGACAAAGATTGCACAT
CAGCTCCAGCATTGTCAGTGAATTCTTTCAGTTTCTGAACAGTGCAAACAATACCGATTTAGAA
CTAACGGGATTTTTACTCTTCAGCTTTACACAAATAGAAAGTAACTTTTAAATCAGGTTCACAT
GTCAGATTGATTGAAACAACGGGTTTATCAGTAACCCATGTATATATATCAGACGTGTACATCT
GTCTTGAGTAACAGGTGTATCACCAATAGAGGCTCTTTTACTATTGTATATTAGATTCTCATTT
GGGCATGTCCCAGTAAAATTGATGTAATGCTGTCTGAGAAGCACATCCAGATGACAATCATAAA
ACAAGCACATGAAAAAACTGTTAACAAGCCTGGATAACATTTTTGTAGAATTTCTGGGGAAGAA
ATTACTAATTTTAGTCCACAGAGCAGGTAGTGTAATCCACTAAAAGGAACCAACTTAATATTTA
AATACGTCAGAAATAAGTCAAAATGGGGTAGATCCTTGACCTCACGAAAAATCTCTGATACTGG
ACCATCACTTTCTGAAGCATTATACTCGAGCTGAACCTTTTCCAGCCCTTTACTAACCGCTTGC
ATTTCTTCTGCCAGCATTTTTAGTTGTATCTGTTCAGGAAAACACCGATTAGAACAGCATATAC
ATATCGAAAGTAAATAAATTATATATGCTACAAGATTGATAGAATAGTAAAAGAAAACTCAAAC
CTTTGATGTAGCTTCTAAACTAACAAGATCCATGTAGAAGTCCAGAAGCTGTGATGATTTTGCA
GCAAGTACCTGATATTACATTTTCTTTTGTTACGGTGTACGCAAGATAGATACTGATGTAAAAT
CATTTCAACTCAAGCAAATGTGAACTTAACCAGGACTATAAAGAAGTTATGGCCAGATACTCAA
ACTATAAGTCATCGTAGAATATAGTAATATAACCTTGTTACAGAATAAATTAAGTGGAAGTGCA
TCATTGTATATATATTTGCTTACAACATGACATGCAAATCATGAACTCACAGTTTCCACCATCA
AATAAATTGACTTCAGGGTCCTGATTTGAATAAAATTATTTGATGCAGTCCAAACTTGATTTAC
AGTTAAGCAGGTAAACTATTGGTGAAAAGCTACCATGTTCACTTTTGACAACCCAGCGGAACAG
GAATTGTTTAAGGCGTACCTTGCAGAGGTAGTGCATAAGTGTCATTTTATTATTTGTTGCTCGG
GTATCTGTTAGTTTTAGAAGACTGTCCAACCGGAAGCCAACTGCAGCACCTGTAAGCAAACCAA
CAAATGTGAAACTATCCAAGAACAGTACTAATAGTCTAATATATAACCACTTAACTAAAGAAAA
TCAAAAGGATGCCCCAGTGTAAAGAAACAACTGAACTAACAAACAATTTGAATGTTACCAAATG
TGTAACCTATCATTATGAACTCTAGAAGAACGAGAAAAGCCATCAGTAGCCCTACATACTCCTG
TATTTGTGGTGGTGATAATTGATTTAAATTAGAAACATCGGTCGCATTACTATGGGTTTTTCAG
AAACTAGGATGTTGCCTATACTCCAAAAGAAAGGGAGGAATTATCAGCCTAAATTGATTATTCA
TTCTTCCTAGGATGCACAATCTTTTTGTTCCAACAAAAACACCGTGCCTATTTTTTTTTTCTCA
AATATGCAGGAGAACTGCATATCATTGCATTAAGGAGAGAATATTTACAAGACTCAACACACAT
GCCCCCACTTCCTCACAATGATTTTAAAAATACACCACAAACAAACAACAAAAGAAAAAGAAAA
AAGAACTTGTGGGAAAGATTCCTATTTTAGAGATTAAACATGTTGCAGGAAAACTTCAATGTCA
ATCTCTTCATTTCTGCCTAGCAAGAAGCCAGTAAAATTACAGAGCTGGTAGACATAAATGCAGC
TGCATTTCATATGCCAACGAATAACTAAAGATAATGTGACCAACTAAATTGAGTGTAACAGAGA
AAATGCAGTTGTTGTACCTCTAGCAGTACCCTGGTTCAATGTATTCCCAAGGAGGAGAATTTTC
TTCATGATTTCTTTTAACTTGAGAGAACTTCGAATCTGATGATGCAGATATTTTTTAGAAAACA
GGAATTCGACTTAGTATAAATTACATAAGAAGCAATATTGATTGAAAAAAAACTAATCCCGATT
ATAAATGAACCTCATCACATGAAGAGTCTATGGTGTTCAAACTTTTTCGAAGATCTGCGACTTG
CGAACCAAACTGGATCTTGAAGGAGAACACCCGCAGTTTTGACTCCATTCGTGGCACTTTCATC
AATTCTAGGAAGAACTGCAGCAGGAAAATAATTGTTTAATGCATACGGATCTACCAAGCTGGCA
TAAACGTATAACACCTGAGACCATTTTGCTTTAAAAACTCAAAATGTAAAAGGTAATGTCTTTA
GTGAATGTGGACTGACCAGGCCATCAAATACTTGCAAGGCCAAGCAACGAAAATAAACAAATAA
CTAATTGGTTGATTGGTACTCCCTCCGTTTCATATTATAAGTCGATTTGACTTTAGTTTGACTA
AGTTTATAGAAAAATATAGCAACATCTTCAACACAAAAAAAATATTATCAAAATATATTCAATG
TTACATTTAATGAAACTAATTTGGTGTTAGAGATGTTGCTAAATTTTTCTATAAACTTGATCAA
ACCTAAAGAAGTTTGACTAGGAAAAAAGTCAAAGCGACTTATAATATGAAACGGAGAGAGTAGA
AGTTATTTAGTTGTCGTCTTATCCAAAGCACTATTTCTTAGGCTTATCTATTTAAGAGGTAGGA
GATTCGTTCATGAATTTAGCCTCTGCTCCTTCCATCTATCTCTGTAGATGTTCCATTCTTCTAT
TGTGCACCTTTATACTCTCGTGCCAGTTATCCTTAAACCATGCCCATTCATTTAGAAGTAAGAG
CTAAACAAAGTTTCCCCCCACCCTATTTCCTACACTCTTAACAAAAATTTAGCCTCTGCTCACT
ATGCCATCTATATCTGCTGTGTTCAGCTTTTCTCTAGCTATAGTGCCATTTTTCTCCTATGCCA
AATTGCCAGTTTATTATCGAGCCATATCATACGGCCTCTTCTACACAGTATCCACCCTGTTTTG
AGTTGATGTTAAAAACAGGGATATTAGTTATCAAGCAGAGGAACCAGAAGACTGTTTTATGTAC
ATTTAAACTCTGACCATTGTGTTTCATTCTAAAATTGCCAAAATCTCCAATTAAGACCCAAAAA
ATGTGTTTTTATGTGTGCTGACAGGACTAATATATAATAAAGCACAATGGGCAAATATTCTAAT
TCCAGTAACAATGGGCAAATATTCTAATTCCACTAGATGACTAGATGGCAAATAACCATTACCT
GTTCGCATTTACCCAGATTTTCCTTATCTCCAGTGTAATTCTGGAAAAAAACGAGACAGTAAGC
CAACATAGTTTTCAGATGAGATCACAACAAGGCCAAACATTGTATTACCTTGAGAAGTTCCATT
TCTTCTTTTGTAGGACAGAACTTTATGAGATTCTCCACTTGATCAACATCCAAGGTAGATTGGT
CCAGTGCCAAAGCCGCACTCTAGAGAAAATTTAAGCCATTAAGATATAAAAAATCAATCATGTT
ACCATTATCTTTGCTTGTTTTATAAGATAATTACCACCAAATCTGGCAGTGGCATCTTCACTTT
TGTCAGCATGATCTCTGTGTTGTTTGCCCTCCTCAACTCAATCTAATCACATAAAAGTGTTAAG
ACTATTGTAACATGGTCATTTACAAAGTCTAATAAATACAGGTTCTTGAGACTGTTTGCATAGT
TTTGTGATATGATAATGAGATCATGTAACACATTTGTCATAACTTAAATGTCCAACAAATCTAG
TGTCTTTCTGACCTTGATCACTGATACAAATTAGAAAGGAAATTAAAATTAGCATGTACTTACT
AGGTGAACTTTTTCTGGCTTTGAACCAAGCGATTTT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021