Detail information of AT5G01620_circ_g.1


General Information
CircRNA Name AT5G01620_circ_g.1
ID in PlantcircBase ath_circ_035905
Alias NA
Organism Arabidpsis thaliana
Position chr5: 233207-233492  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT5G01620
Parent gene annotation TRICHOME BIREFRINGENCE-LIKE 35
Parent gene strand +
Alternative splicing AT5G01620_circ_g.2
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT5G01620.1:1
AT5G01620.2:1
AT5G01620.3:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTCCTTACATGTCCGACCAGTTGGCTTGTCAGAAGCATGGTAGGAAGGATTTGGAGTATCAGCA
TTGGAGATGGCAACCTCATGCCTGCAACTTGAAGAGaggttttggatagattcagcaaatgcaa
ctcgacgaaagagtacagtgggaagaaaatcggatgggttgacccgtttgaagaccacccgggt
caagtaac
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 286
Transcript exons: 233207-233492
AGGTTTTGGATAGATTCAGCAAATGCAACTCGACGAAAGAGTACAGTGGGAAGAAAATCGGATG
GGTTGACCCGTTTGAAGACCACCCGGGTCAAGTAACAAAGGAGGAGCAGAAATGTGATGTCTTT
TCTGGGAAATGGGTCTTTGATAATTCATCATCATACCCTTTACACAAGGAATCTCAGTGTCCTT
ACATGTCCGACCAGTTGGCTTGTCAGAAGCATGGTAGGAAGGATTTGGAGTATCAGCATTGGAG
ATGGCAACCTCATGCCTGCAACTTGAAGAG

Genomic sequence AGGTTTTGGATAGATTCAGCAAATGCAACTCGACGAAAGAGTACAGTGGGAAGAAAATCGGATG
GGTTGACCCGTTTGAAGACCACCCGGGTCAAGTAACAAAGGAGGAGCAGAAATGTGATGTCTTT
TCTGGGAAATGGGTCTTTGATAATTCATCATCATACCCTTTACACAAGGAATCTCAGTGTCCTT
ACATGTCCGACCAGTTGGCTTGTCAGAAGCATGGTAGGAAGGATTTGGAGTATCAGCATTGGAG
ATGGCAACCTCATGCCTGCAACTTGAAGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.302239672
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017