Detail information of Zm00001d031256_circ_g.5


General Information
CircRNA Name Zm00001d031256_circ_g.5
ID in PlantcircBase zma_circ_006696
Alias zma_circ_0000327, GRMZM2G023906_C2
Organism Zea mays
Position chr1: 184098103-184099690  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ, CIRI2
Parent gene Zm00001d031256
Parent gene annotation LETM1-like protein
Parent gene strand +
Alternative splicing Zm00001d031256_circ_g.1 Zm00001d031256_circ_g.2 Zm00001d031256_circ_g.3 Zm00001d031256_circ_g.4
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d031256_T028:5
Zm00001d031256_T023:5
Zm00001d031256_T029:5
Zm00001d031256_T001:5
Zm00001d031256_T021:5
Zm00001d031256_T004:4
Zm00001d031256_T017:5
Zm00001d031256_T014:5
Zm00001d031256_T005:5
Zm00001d031256_T003:4
Zm00001d031256_T002:5
Zm00001d031256_T007:5
Zm00001d031256_T031:4
Zm00001d031256_T013:5
Zm00001d031256_T020:5
Zm00001d031256_T025:5
Zm00001d031256_T019:5
Zm00001d031256_T010:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATTGGGGATGAACTAACTCAGAAGGAAAAGCAGGCTCTTCAAAGAACATTGACAGATTTGGCG
TCTGTCGTTCCTATAGGAATACTCATGCTTTTGCCAgccgatgcaagtagcggatcactatctc
ctgcagaggaaggacctgtaaagacaagtagcaggacgaacgatacatcagcaccacaaaaaac
aggaagca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 609
Transcript exons: 184098103-184098203,184098320-184098398,184098635-184098
769,184098979-184099101,184099520-184099690
GCCGATGCAAGTAGCGGATCACTATCTCCTGCAGAGGAAGGACCTGTAAAGACAAGTAGCAGGA
CGAACGATACATCAGCACCACAAAAAACAGGAAGCAGGGTGGATAATAAACGTCGCCCATTTTG
GGACTTCTTTGGTCGGTCTTTGAAAGTTGATCCAGCTCTTGCAGATCAGGATCTGATCACTGTC
GCCAATGTGGAGAAGGAAGGCATGGAGTCAAATGACATCCTCCGCTTCGAACAGTTAAGACGTG
AGCTGATTGAGTTAGAAAAGAGAGTGCAGAAGAGTGCGGATGAAGCTCAAAAGGAGGAGGAGAT
GGTTGTCGCAGAAAAAACAACTGCACCATCGCCTGGATCATCAGTTTCTTCTCGTCAGACTACC
AAGAAAGAAAATGTCATAACTAAATCAGTGGAGAAGGTCAAAGAGACTACAACGACTGTGTTGC
AGGGGACACAACTATTAGCAATTGATACAGGAGCTGCTATGGGTTTGCTAAAAAGAGCTCTTAT
TGGGGATGAACTAACTCAGAAGGAAAAGCAGGCTCTTCAAAGAACATTGACAGATTTGGCGTCT
GTCGTTCCTATAGGAATACTCATGCTTTTGCCA

Genomic sequence GCCGATGCAAGTAGCGGATCACTATCTCCTGCAGAGGAAGGACCTGTAAAGACAAGTAGCAGGA
CGAACGATACATCAGCACCACAAAAAACAGGAAGCAGGTGCAGTACTCTTTGTACTAATACTAA
TTAACTAGTTCAAACATGGTTGTGATAGCTTCTGTGATTTCAAGGCAGTAAAATAGACCTGTTC
AGTTGTTTCCTATTTCTCTTGTCAGGGTGGATAATAAACGTCGCCCATTTTGGGACTTCTTTGG
TCGGTCTTTGAAAGTTGATCCAGCTCTTGCAGATCAGGATGTATGGATGCTGTACTGTATGTTT
GCAGTTTGTTTTGTGCACTAAAGAACACATCAACATTTTGCGGTTAAACAATTTCCAATATGCA
TCCTTGTTTCATGAACAGTCCTTGACCATGGCTCTAGTTAATTACTGAAAATTAACTGTGGCCT
TCAAAAGAATACCATATAATTTTATCTCTTGAGATTCGTATTGCAGCGTATTCCTAACCTTATG
GTATTATCCCATTTTTATAGCTGATCACTGTCGCCAATGTGGAGAAGGAAGGCATGGAGTCAAA
TGACATCCTCCGCTTCGAACAGTTAAGACGTGAGCTGATTGAGTTAGAAAAGAGAGTGCAGAAG
AGTGCGGATGAAGCTCAAAAGGAGGAGGTATACCTGTTTAACAGAATCTTGAAATAGCAAATTG
CTGGTTCTTCAGTATTTGTGCAAACTCTTGGAACAGGACCTTAGCAGTGATTCTGTAATCGCTA
TGAGCTTAATTGCACTCTTGCATTGTTAGTTCTGTTATTTTCTGAGTTTTGCGTACATATTTTT
TCTTGTTCAAAGGATCGTCTATTCAGTCAAGTCCTGTTTTCCAGGAGATGGTTGTCGCAGAAAA
AACAACTGCACCATCGCCTGGATCATCAGTTTCTTCTCGTCAGACTACCAAGAAAGAAAATGTC
ATAACTAAATCAGTGGAGAAGGTCAAAGAGACTACAACGGTATGACCATCTAAACCTAAGATCT
CATAGAGTAAAGGGCTGTTTGATGTGCTACCTAAGACGTCACAACATGTCTAACTTTTTTTTGC
CTAAGCTTAGTTTTTCAATTCGAACGACTAAGATTAGACAGACCGTGGCGCCTTAGGTAGGAAA
CCAAACAGGCCATAAGAAATACATGCTAGCATTTATTTATGAGATTTGCAAGCTTCTCTTCTGT
TGTGGCTGACGATAATGACACTTGAAGACATGGTATCATTGTGAAAGATTGTAGTAGGGGGGGT
TGAATAATCGAATTAACTTTATCCAAAAGACTATTTGCCAATCCAAAGCCGCTCATCAAAGTAT
TGTTAGCTCCATACTTCCCACTGTACTAGTTTAAAGAAAAACTTGTTCCTTATTCATATTTTTT
TCTGCACAGACTGTGTTGCAGGGGACACAACTATTAGCAATTGATACAGGAGCTGCTATGGGTT
TGCTAAAAAGAGCTCTTATTGGGGATGAACTAACTCAGAAGGAAAAGCAGGCTCTTCAAAGAAC
ATTGACAGATTTGGCGTCTGTCGTTCCTATAGGAATACTCATGCTTTTGCCA
Conservation Information
Conserved circRNAs NA
PMCS 0.078485392
Functional Information
Coding potential Y
Potential coding position 184098669-184099687(+)
184098344-184099679(-)
Potential amino acid sequence MESNDILRFEQLRRELIELEKRVQKSADEAQKEETVLQGTQLLAIDTGAAMGLLKRALIGDELT
QKEKQALQRTLTDLASVVPIGILMLLPADASSGSLSPAEEGPVKTSSRTNDTSAPQKTGSRVDN
KRRPFWDFFGRSLKVDPALADQDLITVANVEKEGMESNDILRFEQLRRELIELEKRVQKSADEA
QKEETVLQGTQLLAIDTGAAMGLLKRALIGDELTQKEKQALQRTLTDLASVVPIGILMLLPADA
SSGSLSPAEEGPVKTSSRTNDTSAPQKTGSRVDNKRRPFWDFFGRSLKVDPALADQDLITVANV
EKEGMESNDILRFEQLRRELIELEKRVQKSADEAQKEETVLQGTQLLAIDTGAAMGLLKRALIG
DELTQKEKQALQRTLTDLASVVPIGILMLLPADASSGSLSPAEEGPVKTSSRTNDTSAPQKTGS
RVDNKRRPFWDFFGRSLKVDPALADQDLITVANVEKEGMESNDILRFEQLRRELIELEKRVQKS
ADEAQKEETVLQGTQLLAIDTGAAMGLLKRALIGDELTQKEKQALQRTLTDLASVVPIGILMLL
P(+)
MGDVYYPPCFLFFVVLMYRSSCYLSLQVLPLQEIVIRYLHRLAKA*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to drought stress
Other Information
References Ma et al., 2021b;Zhang et al., 2019