Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d031256_circ_g.5 |
ID in PlantcircBase | zma_circ_006696 |
Alias | zma_circ_0000327, GRMZM2G023906_C2 |
Organism | Zea mays |
Position | chr1: 184098103-184099690 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ, CIRI2 |
Parent gene | Zm00001d031256 |
Parent gene annotation |
LETM1-like protein |
Parent gene strand | + |
Alternative splicing | Zm00001d031256_circ_g.1 Zm00001d031256_circ_g.2 Zm00001d031256_circ_g.3 Zm00001d031256_circ_g.4 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d031256_T028:5 Zm00001d031256_T023:5 Zm00001d031256_T029:5 Zm00001d031256_T001:5 Zm00001d031256_T021:5 Zm00001d031256_T004:4 Zm00001d031256_T017:5 Zm00001d031256_T014:5 Zm00001d031256_T005:5 Zm00001d031256_T003:4 Zm00001d031256_T002:5 Zm00001d031256_T007:5 Zm00001d031256_T031:4 Zm00001d031256_T013:5 Zm00001d031256_T020:5 Zm00001d031256_T025:5 Zm00001d031256_T019:5 Zm00001d031256_T010:5 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.078485392 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
184098669-184099687(+) 184098344-184099679(-) |
Potential amino acid sequence |
MESNDILRFEQLRRELIELEKRVQKSADEAQKEETVLQGTQLLAIDTGAAMGLLKRALIGDELT QKEKQALQRTLTDLASVVPIGILMLLPADASSGSLSPAEEGPVKTSSRTNDTSAPQKTGSRVDN KRRPFWDFFGRSLKVDPALADQDLITVANVEKEGMESNDILRFEQLRRELIELEKRVQKSADEA QKEETVLQGTQLLAIDTGAAMGLLKRALIGDELTQKEKQALQRTLTDLASVVPIGILMLLPADA SSGSLSPAEEGPVKTSSRTNDTSAPQKTGSRVDNKRRPFWDFFGRSLKVDPALADQDLITVANV EKEGMESNDILRFEQLRRELIELEKRVQKSADEAQKEETVLQGTQLLAIDTGAAMGLLKRALIG DELTQKEKQALQRTLTDLASVVPIGILMLLPADASSGSLSPAEEGPVKTSSRTNDTSAPQKTGS RVDNKRRPFWDFFGRSLKVDPALADQDLITVANVEKEGMESNDILRFEQLRRELIELEKRVQKS ADEAQKEETVLQGTQLLAIDTGAAMGLLKRALIGDELTQKEKQALQRTLTDLASVVPIGILMLL P(+) MGDVYYPPCFLFFVVLMYRSSCYLSLQVLPLQEIVIRYLHRLAKA*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Ma et al., 2021b;Zhang et al., 2019 |