Detail information of Zm00001d005969_circ_g.1


General Information
CircRNA Name Zm00001d005969_circ_g.1
ID in PlantcircBase zma_circ_001162
Alias circ497
Organism Zea mays
Position chr2: 194254969-194255260  JBrowse»
Reference genome AGPv4.38
Type   ei-circRNA
Identification method CIRI
Parent gene Zm00001d005969
Parent gene annotation Transcription factor BIM3
Parent gene strand +
Alternative splicing Zm00001d005969_circ_g.2 Zm00001d005969_circ_g.3 Zm00001d005969_circ_g.4
Support reads 9
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   GT-TA
Number of exons covered Zm00001d005969_T008:1
Zm00001d005969_T009:1
Zm00001d005969_T003:1
Zm00001d005969_T004:1
Zm00001d005969_T007:1
Zm00001d005969_T012:1
Zm00001d005969_T014:1
Zm00001d005969_T010:1
Zm00001d005969_T011:1
Zm00001d005969_T006:1
Zm00001d005969_T002:1
Zm00001d005969_T001:1
Zm00001d005969_T005:1
Zm00001d005969_T013:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCCGTGTCGGTCGCGCTGCCGTCGGCCGTCGTCAAGTCGGAGCCGCCGCCGTTCGTGCTCTGGG
GCCAACCTGCAGCGACGCTGCAGCCGGGCGCGCGAGggtaattttctcttgaagacgcacgact
tcctgcagccgttcgatcagaagccaggagcgccgccggagccgtcgccgctgcccgctccagc
cgcggaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTAATTTTCTCTTGAAGACGCACGACTTCCTGCAGCCGTTCGATCAGAAGCCAGGAGCGCCGC
CGGAGCCGTCGCCGCTGCCCGCTCCAGCCGCGGAGATCAGGCACCGGCAGCAGGTGGCGGTCGC
CAAGCAGCGCGCGCTGCCCCTTCCCCTGCCCGGCGGCGTCGGCACCTTCAGCATCAGCCCCGCG
CCCGTGTCGGTCGCGCTGCCGTCGGCCGTCGTCAAGTCGGAGCCGCCGCCGTTCGTGCTCTGGG
GCCAACCTGCAGCGACGCTGCAGCCGGGCGCGCGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.100172717
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b