Detail information of AT2G22990_circ_g.5


General Information
CircRNA Name AT2G22990_circ_g.5
ID in PlantcircBase ath_circ_014488
Alias NA
Organism Arabidpsis thaliana
Position chr2: 9787071-9789746  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene AT2G22990
Parent gene annotation sinapoylglucose 1
Parent gene strand +
Alternative splicing 2_circ_ag.3 2_circ_ag.4 2_circ_ag.5 AT2G22920_circ_g.1 2_circ_ag.2 2_circ_ag.3 2_circ_ag.4 2_circ_ag.5 2_circ_ag.6 AT2G22920_circ_g.7 AT2G22920_circ_g.8 AT2G22920_circ_g.9 2_circ_ag.10 2_circ_ag.11 2_circ_ag.12 AT2G22920_circ_g.13 2_circ_ag.14 2_circ_ag.15 2_circ_ag.16 2_circ_ag.17 2_circ_ag.18 2_circ_ag.19 2_circ_ag.20 AT2G22970_circ_g.1 2_circ_ag.2 2_circ_ag.3 AT2G22970_circ_g.4 AT2G22970_circ_g.5 AT2G22970_circ_g.6 2_circ_ag.7 2_circ_ag.8 2_circ_ag.9 2_circ_ag.10 2_circ_ag.11 AT2G22980_circ_g.1 AT2G22980_circ_g.2 2_circ_ag.3 2_circ_ag.4 2_circ_ag.5 2_circ_ag.6 AT2G22990_circ_g.1 2_circ_ag.2 AT2G22990_circ_g.3 AT2G22990_circ_g.4 2_circ_ag.6 2_circ_ag.7 AT2G22990_circ_g.8 AT2G22990_circ_g.9 AT2G22990_circ_g.10 2_circ_ag.11 AT2G22990_circ_g.12 2_circ_ag.13 AT2G22990_circ_g.14 AT2G22990_circ_g.15 AT2G22990_circ_g.16 AT2G22990_circ_g.17 AT2G22990_circ_g.18 AT2G22990_circ_g.19 AT2G22990_circ_g.20 AT2G22990_circ_g.21 AT2G22990_circ_g.22 AT2G22990_circ_g.23 2_circ_ag.24 AT2G23000_circ_g.1 2_circ_ag.2 2_circ_ag.3 2_circ_ag.4 2_circ_ag.5 2_circ_ag.6 2_circ_ag.7
Support reads 10
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GC-AG
Number of exons covered AT2G22990.4:10
AT2G22990.1:10
AT2G22990.3:10
AT2G22990.2:10
AT2G22990.5:10
AT2G22990.6:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTAGTCATATCACAAACTTATGAACTCACGTAAAAATCATTTTTTTTTTACAGATACACGAGA
GCTTATTCCAATAAGATGACATTTGCTACTATCAAAatggcaaacattatattcttggatcagc
cagtaggatctggcttctcctactcaaaaactccaattgataaaactggtgacataagtgaagt
aaagagga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATGGCAAACATTATATTCTTGGATCAGCCAGTAGGATCTGGCTTCTCCTACTCAAAAACTCCAA
TTGATAAAACTGGTGACATAAGTGAAGTAAAGAGGACCCATGAGTTTCTTCAAAAGGTAATAAG
AGAAACTTGAAAACGTGTCTTAAAAGCATTTTTCTCTATTTGCATTGAATTTCTTGTGAATGTT
GGAATTCTCTTGGTGTAAAGTTATCATCTTATTTAATGTCCAAGTGTTCCAAGCTTAACACATT
CTAATTTTTTATTTGAACCAAGCGGTTGAGGTGTTTTTTAAAAATTCTGCGTATACGATTGTCT
CATTGATTATAACATCCACATCTCGACTGCATTTTTTTTGTTTTTTTTTTGTAGTGGCTAAGCA
GGCATCCACAATATTTCTCCAACCCTTTATATGTAGTTGGAGATTCTTATTCCGGTATGATTGT
CCCGGCCCTCGTTCAAGAAATCTCACAAGGTATGGTTTTATCATATCAGTCAATTAAAGTCCAC
TTTTCTTCGAATATCATTTAATCCATTTTGTTACTTTTAAACAATATCGACAACGGTGCAGGAA
ATTATATATGTTGCGAACCTCCTATAAATCTACAGGTCATTGATCTTTGATTTACTTCTTGTAT
CATACATAATTTTTCGAACAATAAATATTGATAGTAAAATATATTTTCTTACCAAAACAAAAAC
AGGGTTATATGCTTGGAAACCCTGTAACATATATGGACTTTGAACAAAACTTCCGCATTCCATA
TGCTTATGGTATGGGATTAATCTCCGACGAAATCTATGAGGTATGAAATAAGGCATGCTTATAT
TGTCACTAGAGAGTTTAAATATTTGACGAATCGATATACTACAAGAAAAACATTGATTTCTTAT
AGCCAAAAACGTCGGAAAATGGTAAGAAACAGGTTATTTCTACAATTTTCCTACGAAAAATATT
GGTAGTAAATGTTCCATAGGAAATAAATATTGGTAGGAATTTGGTAGGAAATGTCTCGAGAGTC
TTGCTCTGAGTTTTACTTATATGGTAGCAAATGTCTCGCGAGTCTTGCTCTGAGTTTTGCTTAT
ATTGTATCCTATAATAACATGATTGAAACTTGCCATTTCGAAGCCTCAAACGAAATAATACTGT
TCGAAACTTTCATCAAAAATAATAATAATAATTTTTTTTTTTTTTTTCAAAGAATAATAATAAT
TGTTCAAAACTCTTTTGTTGCAGCCAATGAAGAGAATCTGCAACGGAAATTATTACAATGTGGA
TCCATCTAACACACAATGTTTGAAACTTACTGAAGAATATCATAAGGTACATCACACTCAGAAA
TTTGGTCGATACTTTTATTTATTTATTGTTCTTTTATATATCATTACTAATTCCGATTTTTGTT
TATCCACAGTGCACTGCCAAAATAAATATCCATCACATATTAACACCAGATTGCGATGTAACCA
ATGTAACATCTCCTGATTGTTATGTAAGTAATATCTCTTTCCTCCAAAAATAATTTTTTGACAG
ATTTTGAAAACCTATTTATGTAAAGTACCTCAGCTGCAACCATCTATTTAGTTATAAAAACTAA
GAACGTACTAAAAATGGATGAAATCAAATGTAAAACTATGTGTGGATATATTTTGACATTTCAA
AGAAACATATTTACAAGGTTGCTTTTGCAGTATTATCCATATCATCTCATTGAATGTTGGGCTA
ACGACGAGAGCGTTCGCGAAGCTCTTCATATTGAAAAGGTATATGCCAAGTTTAAATTTAAGAT
TATTGATCAAGGAAGTTTCTAAATTTAAATTAAGGACGATCTATGATTACAGGGTAGTAAAGGA
AAATGGGCGCGATGTAATCGGACTATTCCATACAATCACGACATTGTAAGCAGCATACCATATC
ACATGAATAACAGCATCAGTGGATACCGATCTCTTATTTACAGGTTTGATTTAAAATTACTTAT
CAATTTTAACTCAAATCAGCTCTTAGGTTAGAGTTAAACCTGAATCTTATTTTTAAGAGCTGGT
TTTATACAACTACAAGTAGGATTGGGCAAAATTTTATAAGCTGATAGATCGAAAGTTTAGTAAA
GTTTAATATTTAAAATTTCCTTGTTCAAAAAAGCACATACAAGGAACAAATATAATAGTACTAC
ATAAATATCAAATTTATTCAAACTATTATATATTTATATATAATTATTTTTCAAACGACAACCG
AAAACAAGAGAATTTTTTCAAACTGAACCAAACCCGAATGGAACTACAAATGGTTTTTTTTTTT
TTTTGGATATAGTTTCTGTAAAAACATAAAACCTAATGGATCATACCGAAACCAAAATTGTAAT
CTGAGGTTTTATACAACTTGTCTGATTTATGGTGAACAGTGGTGATCACGACATCGCGGTCCCT
TTTCTTGCAACTCAAGCCTGGATAAGATCTCTCAATTACTCCCCCATTCATAACTGGAGGCCAT
GGATGATAAACAATCAAATCGCTGGGTAATATATATCTATTTTTCCTGTTTTATATATGTCTCT
CTTGTTTATTCATATTTGTAGTCATATCACAAACTTATGAACTCACGTAAAAATCATTTTTTTT
TTACAGATACACGAGAGCTTATTCCAATAAGATGACATTTGCTACTATCAAA
Conservation Information
Conserved circRNAs NA
PMCS 0.101126644
Functional Information
Coding potential Y
Potential coding position 9787071-9789743(+)
Potential amino acid sequence MANIIFLDQPVGSGFSYSKTPIDKTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMI
VPALVQEISQGNYICCEPPINLQGYMLGNPVTYMDFEQNFRIPYAYGMGLISDEIYEPMKRICN
GNYYNVDPSNTQCLKLTEEYHKCTAKINIHHILTPDCDVTNVTSPDCYYYPYHLIECWANDESV
REALHIEKGSKGKWARCNRTIPYNHDIVSSIPYHMNNSISGYRSLIYSGDHDIAVPFLATQAWI
RSLNYSPIHNWRPWMINNQIAGYTRAYSNKMTFATIKMANIIFLDQPVGSGFSYSKTPIDKTGD
ISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCEPPINLQGYML
GNPVTYMDFEQNFRIPYAYGMGLISDEIYEPMKRICNGNYYNVDPSNTQCLKLTEEYHKCTAKI
NIHHILTPDCDVTNVTSPDCYYYPYHLIECWANDESVREALHIEKGSKGKWARCNRTIPYNHDI
VSSIPYHMNNSISGYRSLIYSGDHDIAVPFLATQAWIRSLNYSPIHNWRPWMINNQIAGYTRAY
SNKMTFATIKMANIIFLDQPVGSGFSYSKTPIDKTGDISEVKRTHEFLQKWLSRHPQYFSNPLY
VVGDSYSGMIVPALVQEISQGNYICCEPPINLQGYMLGNPVTYMDFEQNFRIPYAYGMGLISDE
IYEPMKRICNGNYYNVDPSNTQCLKLTEEYHKCTAKINIHHILTPDCDVTNVTSPDCYYYPYHL
IECWANDESVREALHIEKGSKGKWARCNRTIPYNHDIVSSIPYHMNNSISGYRSLIYSGDHDIA
VPFLATQAWIRSLNYSPIHNWRPWMINNQIAGYTRAYSNKMTFATIKMANIIFLDQPVGSGFSY
SKTPIDKTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCE
PPINLQGYMLGNPVTYMDFEQNFRIPYAYGMGLISDEIYEPMKRICNGNYYNVDPSNTQCLKLT
EEYHKCTAKINIHHILTPDCDVTNVTSPDCYYYPYHLIECWANDESVREALHIEKGSKGKWARC
NRTIPYNHDIVSSIPYHMNNSISGYRSLIYSGDHDIAVPFLATQAWIRSLNYSPIHNWRPWMIN
NQIAGYTRAYSNKMTFATIK(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017