Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | BGIOSGA029598_circ_g.1 |
| ID in PlantcircBase | osi_circ_008107 |
| Alias | 9:16745500|16747497 |
| Organism | Oryza sativa ssp. indica |
| Position | chr9: 16745500-16747497 JBrowse» |
| Reference genome | Oryza_indica.ASM465v1.42 |
| Type | e-circRNA |
| Identification method | find_circ |
| Parent gene | BGIOSGA029598 |
| Parent gene annotation | NA |
| Parent gene strand | - |
| Alternative splicing | BGIOSGA029598_circ_g.2 |
| Support reads | NA |
| Tissues | leaf |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | BGIOSGA029598-TA:1 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
16747124-16745502(-) 16747487-16745625(+) |
| Potential amino acid sequence |
MPDETISGELGGRPSMAPEPVGFQETNGLTEQGKESSAGELLSGHCDPLHNMAGVPEKEKGSAG EPVTGNHEDPIDNFSDHKILDGACHNAEEPHAVEAASEFNIGNSANLQQTDSTKDLVLSNADCT QNDNITKDLAPNPTIPQGESKCIDDPMECTDMKPSKKVSEPCDLLDDKFSSFPEGANFNGQEEN SPLSAALNEPDLNSIDMEVDNDNVECKYGNAGDSTSPENGKHIEDQIIDCRMTSLKDHEINTDV RIRDVNLNSCLDAMSPPVSGANYETSNAIDDNNRSSIIAQCFGANSADDNACKEENFVNNQSSV SKAESFNQNNDMMYQPNLTMDPISPAQINVDCFTSCSMTSEIKNNSNRREDNAKEQLVNPRNIT SNDAGFDVEAYSNIFNGAITESSLAQLNNAINMKADYSSCYSLSDLNTLTGGPATDEIDIHSMR NSFVNSSTSRNEPNEHCTLDFDIKGSMLEALEKSDSDLENQYNGSTRPCGSLPTAGTSGSIDDF MSLQTNFGSLTSLVRSVEDGPMSRIIQDQSVGHCQPNSTEEKQSAPPVTSVPFSSHHGDPQRQL DKNETQVEANGKECQKCNLTFQDQSAYVQHQLSFHQRKGKRRKVNKSGEVGANKNVTIVTQECH ITSEDKLGNIDHSLATTKSQGQTPEKMPDETISGELGGRPSMAPEPVGFQETNGLTEQGKESSA GELLSGHCDPLHNMAGVPEKEKGSAGEPVTGNHEDPIDNFSDHKILDGACHNAEEPHAVEAASE FNIGNSANLQQTDSTKDLVLSNADCTQNDNITKDLAPNPTIPQGESKCIDDPMECTDMKPSKKV SEPCDLLDDKFSSFPEGANFNGQEENSPLSAALNEPDLNSIDMEVDNDNVECKYGNAGDSTSPE NGKHIEDQIIDCRMTSLKDHEINTDVRIRDVNLNSCLDAMSPPVSGANYETSNAIDDNNRSSII AQCFGANSADDNACKEENFVNNQSSVSKAESFNQNNDMMYQPNLTMDPISPAQINVDCFTSCSM TSEIKNNSNRREDNAKEQLVNPRNITSNDAGFDVEAYSNIFNGAITESSLAQLNNAINMKADYS SCYSLSDLNTLTGGPATDEIDIHSMRNSFVNSSTSRNEPNEHCTLDFDIKGSMLEALEKSDSDL ENQYNGSTRPCGSLPTAGTSGSIDDFMSLQTNFGSLTSLVRSVEDGPMSRIIQDQSVGHCQPNS TEEKQSAPPVTSVPFSSHHGDPQRQLDKNETQVEANGKECQKCNLTFQDQSAYVQHQLSFHQRK GKRRKVNKSGEVGANKNVTIVTQECHITSEDKLGNIDHSLATTKSQGQTPEKMPDETISGELGG RPSMAPEPVGFQETNGLTEQGKESSAGELLSGHCDPLHNMAGVPEKEKGSAGEPVTGNHEDPID NFSDHKILDGACHNAEEPHAVEAASEFNIGNSANLQQTDSTKDLVLSNADCTQNDNITKDLAPN PTIPQGESKCIDDPMECTDMKPSKKVSEPCDLLDDKFSSFPEGANFNGQEENSPLSAALNEPDL NSIDMEVDNDNVECKYGNAGDSTSPENGKHIEDQIIDCRMTSLKDHEINTDVRIRDVNLNSCLD AMSPPVSGANYETSNAIDDNNRSSIIAQCFGANSADDNACKEENFVNNQSSVSKAESFNQNNDM MYQPNLTMDPISPAQINVDCFTSCSMTSEIKNNSNRREDNAKEQLVNPRNITSNDAGFDVEAYS NIFNGAITESSLAQLNNAINMKADYSSCYSLSDLNTLTGGPATDEIDIHSMRNSFVNSSTSRNE PNEHCTLDFDIKGSMLEALEKSDSDLENQYNGSTRPCGSLPTAGTSGSIDDFMSLQTNFGSLTS LVRSVEDGPMSRIIQDQSVGHCQPNSTEEKQSAPPVTSVPFSSHHGDPQRQLDKNETQVEANGK ECQKCNLTFQDQSAYVQHQLSFHQRKGKRRKVNKSGEVGANKNVTIVTQECHITSEDKLGNIDH SLATTKSQGQTPEKMPDETISGELGGRPSMAPEPVGFQETNGLTEQGKESSAGELLSGHCDPLH NMAGVPEKEKGSAGEPVTGNHEDPIDNFSDHKILDGACHNAEEPHAVEAASEFNIGNSANLQQT DSTKDLVLSNADCTQNDNITKDLAPNPTIPQGESKCIDDPMECTDMKPSKKVSEPCDLLDDKFS SFPEGANFNGQEENSPLSAALNEPDLNSIDMEVDNDNVECKYGNAGDSTSPENGKHIEDQIIDC RMTSLKDHEINTDVRIRDVNLNSCLDAMSPPVSGANYETSNAIDDNNRSSIIAQCFGANSADDN ACKEENFVNNQSSVSKAESFNQNNDMMYQPNLTMDPISPAQINVDCFTSCSMTSEIKNNSNRRE DNAKEQLVNPRNITSNDAGFDVEAYSNIFNGAITESSLAQLNNAINMKADYSSCYSLSDLNTLT GGPATDEIDIHSMRNSFVNSSTSRNEPNEHCTLDFDIKGSMLEALEKSDSDLENQYNGSTRPCG SLPTAGTSGSIDDFMSLQTNFGSLTSLVRSVEDGPMSRIIQDQ(-) MAYRLVLNNSTHWTIFNRTNQRGQATKIGLQGHKIIYTSACASCRE*(+) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Huang et al., 2021 |