Detail information of BGIOSGA029598_circ_g.1


General Information
CircRNA Name BGIOSGA029598_circ_g.1
ID in PlantcircBase osi_circ_008107
Alias 9:16745500|16747497
Organism Oryza sativa ssp. indica
Position chr9: 16745500-16747497  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA029598
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA029598_circ_g.2
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA029598-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCCTCTGAGGATCACCATGGTGACTGGAGAAAGGCACAGATGTAACTGGAGGCGCACTCTGCTT
TTCCTCAGTTGAATTAGGCTGGCAATGGCCTACAGActggtcttgaataattctactcattgga
ccatcttcaacagaacgaaccagagaggtcaggctaccaaaattggtttgcaaggacataaaat
catctata
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGGTCTTGAATAATTCTACTCATTGGACCATCTTCAACAGAACGAACCAGAGAGGTCAGGCTA
CCAAAATTGGTTTGCAAGGACATAAAATCATCTATACTTCCGCTTGTGCCAGCTGTAGGGAGTG
AGCCACAAGGACGAGTGCTGCCATTGTATTGATTCTCCAGGTCACTGTCAGATTTTTCCAGTGC
CTCAAGCATGGAACCCTTGATATCAAAATCCAGTGTGCAATGTTCATTTGGTTCATTTCGACTG
GTGGAGCTATTAACAAAACTATTCCTCATACTGTGAATATCAATTTCATCAGTTGCAGGACCAC
CAGTCAGTGTGTTCAGATCAGATAACGAATAGCAGCTTGAATAATCAGCTTTCATGTTTATTGC
ATTATTCAGCTGGGCAAGACTACTTTCTGTGATAGCGCCATTGAAGATATTGCTGTAAGCTTCA
ACATCAAAACCTGCATCATTGCTAGTAATGTTCCGTGGATTCACCAACTGTTCTTTGGCATTAT
CTTCACGTCTGTTGCTATTGTTCTTAATTTCAGATGTCATTGAACAAGAAGTAAAACAATCCAC
ATTAATTTGAGCAGGAGAGATAGGATCCATGGTCAAATTAGGTTGATACATCATGTCATTGTTC
TGGTTGAAGCTTTCAGCCTTGGATACACTGCTCTGGTTGTTTACAAAATTTTCCTCCTTACAAG
CATTGTCATCGGCAGAATTAGCACCAAAGCATTGGGCAATGATGGATGATCTATTATTGTCATC
TATGGCATTAGATGTTTCATAATTTGCACCAGAAACAGGAGGAGACATTGCATCTAAACATGAA
TTGAGGTTGACATCTCTTATCCTGACATCGGTATTGATCTCATGATCTTTCAAAGAAGTCATTC
TGCAATCAATAATCTGATCTTCAATATGTTTGCCATTTTCAGGACTAGTAGAATCGCCTGCATT
CCCGTACTTGCATTCTACATTGTCATTGTCTACCTCCATGTCAATCGAATTTAGATCAGGCTCA
TTCAAAGCAGCAGAAAGTGGGCTATTTTCCTCCTGACCATTAAAATTAGCTCCTTCAGGAAAAC
TACTAAATTTGTCATCCAGTAGATCACAAGGCTCAGAAACTTTTTTGGATGGTTTCATATCAGT
ACACTCCATCGGATCATCAATACACTTGCTTTCACCTTGAGGAATTGTAGGATTAGGAGCTAAA
TCCTTTGTGATGTTGTCATTCTGGGTGCAATCTGCATTGGAAAGTACTAAATCCTTCGTGCTGT
CAGTCTGCTGTAAGTTTGCAGAGTTACCAATATTAAATTCGCTTGCAGCTTCAACAGCATGAGG
CTCTTCAGCATTATGACATGCTCCATCAAGGATTTTGTGGTCACTGAAATTGTCAATGGGGTCC
TCGTGATTCCCAGTGACAGGTTCTCCAGCAGATCCTTTTTCCTTCTCAGGTACACCAGCCATAT
TGTGAAGAGGATCACAATGTCCAGAGAGAAGTTCACCAGCAGAAGATTCTTTTCCCTGTTCAGT
TAAGCCATTCGTCTCTTGAAAACCAACTGGCTCTGGTGCCATGGATGGTCGACCACCTAACTCT
CCTGAAATGGTCTCGTCAGGCATTTTTTCTGGTGTTTGACCTTGAGATTTTGTGGTAGCTAAAC
TATGGTCAATATTGCCCAGTTTATCTTCAGAAGTTATGTGACATTCTTGAGTCACAATTGTTAC
ATTTTTGTTGGCTCCCACTTCACCAGACTTATTAACCTTGCGCCTTTTACCCTTCCTTTGGTGA
AAGGACAACTGATGTTGCACATAGGCACTCTGGTCCTGAAAAGTCAAATTGCACTTTTGGCACT
CTTTTCCATTTGCTTCCACCTGAGTTTCATTCTTATCAAGTTGCCTCTGAGGATCACCATGGTG
ACTGGAGAAAGGCACAGATGTAACTGGAGGCGCACTCTGCTTTTCCTCAGTTGAATTAGGCTGG
CAATGGCCTACAGA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 16747124-16745502(-)
16747487-16745625(+)
Potential amino acid sequence MPDETISGELGGRPSMAPEPVGFQETNGLTEQGKESSAGELLSGHCDPLHNMAGVPEKEKGSAG
EPVTGNHEDPIDNFSDHKILDGACHNAEEPHAVEAASEFNIGNSANLQQTDSTKDLVLSNADCT
QNDNITKDLAPNPTIPQGESKCIDDPMECTDMKPSKKVSEPCDLLDDKFSSFPEGANFNGQEEN
SPLSAALNEPDLNSIDMEVDNDNVECKYGNAGDSTSPENGKHIEDQIIDCRMTSLKDHEINTDV
RIRDVNLNSCLDAMSPPVSGANYETSNAIDDNNRSSIIAQCFGANSADDNACKEENFVNNQSSV
SKAESFNQNNDMMYQPNLTMDPISPAQINVDCFTSCSMTSEIKNNSNRREDNAKEQLVNPRNIT
SNDAGFDVEAYSNIFNGAITESSLAQLNNAINMKADYSSCYSLSDLNTLTGGPATDEIDIHSMR
NSFVNSSTSRNEPNEHCTLDFDIKGSMLEALEKSDSDLENQYNGSTRPCGSLPTAGTSGSIDDF
MSLQTNFGSLTSLVRSVEDGPMSRIIQDQSVGHCQPNSTEEKQSAPPVTSVPFSSHHGDPQRQL
DKNETQVEANGKECQKCNLTFQDQSAYVQHQLSFHQRKGKRRKVNKSGEVGANKNVTIVTQECH
ITSEDKLGNIDHSLATTKSQGQTPEKMPDETISGELGGRPSMAPEPVGFQETNGLTEQGKESSA
GELLSGHCDPLHNMAGVPEKEKGSAGEPVTGNHEDPIDNFSDHKILDGACHNAEEPHAVEAASE
FNIGNSANLQQTDSTKDLVLSNADCTQNDNITKDLAPNPTIPQGESKCIDDPMECTDMKPSKKV
SEPCDLLDDKFSSFPEGANFNGQEENSPLSAALNEPDLNSIDMEVDNDNVECKYGNAGDSTSPE
NGKHIEDQIIDCRMTSLKDHEINTDVRIRDVNLNSCLDAMSPPVSGANYETSNAIDDNNRSSII
AQCFGANSADDNACKEENFVNNQSSVSKAESFNQNNDMMYQPNLTMDPISPAQINVDCFTSCSM
TSEIKNNSNRREDNAKEQLVNPRNITSNDAGFDVEAYSNIFNGAITESSLAQLNNAINMKADYS
SCYSLSDLNTLTGGPATDEIDIHSMRNSFVNSSTSRNEPNEHCTLDFDIKGSMLEALEKSDSDL
ENQYNGSTRPCGSLPTAGTSGSIDDFMSLQTNFGSLTSLVRSVEDGPMSRIIQDQSVGHCQPNS
TEEKQSAPPVTSVPFSSHHGDPQRQLDKNETQVEANGKECQKCNLTFQDQSAYVQHQLSFHQRK
GKRRKVNKSGEVGANKNVTIVTQECHITSEDKLGNIDHSLATTKSQGQTPEKMPDETISGELGG
RPSMAPEPVGFQETNGLTEQGKESSAGELLSGHCDPLHNMAGVPEKEKGSAGEPVTGNHEDPID
NFSDHKILDGACHNAEEPHAVEAASEFNIGNSANLQQTDSTKDLVLSNADCTQNDNITKDLAPN
PTIPQGESKCIDDPMECTDMKPSKKVSEPCDLLDDKFSSFPEGANFNGQEENSPLSAALNEPDL
NSIDMEVDNDNVECKYGNAGDSTSPENGKHIEDQIIDCRMTSLKDHEINTDVRIRDVNLNSCLD
AMSPPVSGANYETSNAIDDNNRSSIIAQCFGANSADDNACKEENFVNNQSSVSKAESFNQNNDM
MYQPNLTMDPISPAQINVDCFTSCSMTSEIKNNSNRREDNAKEQLVNPRNITSNDAGFDVEAYS
NIFNGAITESSLAQLNNAINMKADYSSCYSLSDLNTLTGGPATDEIDIHSMRNSFVNSSTSRNE
PNEHCTLDFDIKGSMLEALEKSDSDLENQYNGSTRPCGSLPTAGTSGSIDDFMSLQTNFGSLTS
LVRSVEDGPMSRIIQDQSVGHCQPNSTEEKQSAPPVTSVPFSSHHGDPQRQLDKNETQVEANGK
ECQKCNLTFQDQSAYVQHQLSFHQRKGKRRKVNKSGEVGANKNVTIVTQECHITSEDKLGNIDH
SLATTKSQGQTPEKMPDETISGELGGRPSMAPEPVGFQETNGLTEQGKESSAGELLSGHCDPLH
NMAGVPEKEKGSAGEPVTGNHEDPIDNFSDHKILDGACHNAEEPHAVEAASEFNIGNSANLQQT
DSTKDLVLSNADCTQNDNITKDLAPNPTIPQGESKCIDDPMECTDMKPSKKVSEPCDLLDDKFS
SFPEGANFNGQEENSPLSAALNEPDLNSIDMEVDNDNVECKYGNAGDSTSPENGKHIEDQIIDC
RMTSLKDHEINTDVRIRDVNLNSCLDAMSPPVSGANYETSNAIDDNNRSSIIAQCFGANSADDN
ACKEENFVNNQSSVSKAESFNQNNDMMYQPNLTMDPISPAQINVDCFTSCSMTSEIKNNSNRRE
DNAKEQLVNPRNITSNDAGFDVEAYSNIFNGAITESSLAQLNNAINMKADYSSCYSLSDLNTLT
GGPATDEIDIHSMRNSFVNSSTSRNEPNEHCTLDFDIKGSMLEALEKSDSDLENQYNGSTRPCG
SLPTAGTSGSIDDFMSLQTNFGSLTSLVRSVEDGPMSRIIQDQ(-)
MAYRLVLNNSTHWTIFNRTNQRGQATKIGLQGHKIIYTSACASCRE*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021