Detail information of BGIOSGA032079_circ_ig.1


General Information
CircRNA Name BGIOSGA032079_circ_ig.1
ID in PlantcircBase osi_circ_008878
Alias Chr10:12635619_12638170(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 9187098-9189650  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TT
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCGAGTTCGATTACGACAGGCACGCCTGAATGAATTTGAAATGACAAAGACGATCGATCGCGAT
CAAAAAAGAGATCAAACTGACAGAATGGACACGAACgagcaagacaagggaagctacaactctt
gtgctctcctatttatagccgcaaccacaaggaatacagagtgtacaatgtaatgtaagccatg
cagagaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAGCAAGACAAGGGAAGCTACAACTCTTGTGCTCTCCTATTTATAGCCGCAACCACAAGGAATA
CAGAGTGTACAATGTAATGTAAGCCATGCAGAGAGAAATTAAAGAAGTTATTATAAAATTGTAG
TTGTAATAACTTTTGCAGATGGCTGGTATTTATGTTCTTTCTTTTCTGATCTGTCCTTTACTGA
AATAATTGTACACTTTCTTTGAGACTATGTAATGGTAGGCACTAGGTTGCACACCATTGTCGAT
TTCGATTAGCTGATGCAATAGTGGAGTGGACAACTGGACACTACAGTGAAGAGTAAACGGCAAA
AAGATCTTGGGAGACTTACAAACTCGTAAGATATTTATGGTCCAAGACTCTAAAACAGTACAGT
ACTACTAACAATGGTAGTAGACAGTAGCATACCACTATCTCCAAATTGGATAAAACAGTGCAAA
TGACAGTCTCCAAACACTGAGCCTCTCTCCAAAGGTCAGACATTTCTCCCTGACGAAAATACAG
AAGCAGAGCACATGCTGAAGAAATAAAATACAGTTTGTGCATGTTTTCTGTACAGGAATACAGG
GGCGTTTTTGGCTGTGTGCAATGGTGACAAGGAGTTGTTAAATTTGCAATAACAACCATGGATA
CAGCTCAACGGAGGAGAGAAGCTTTGTACGCATCCTCTGGGCTTATCTCCATGGATGAGCTAAG
TGGTCAACACAAAGAGAGCACATTTTTTCTTCTCTGCAATTCTTTGTTTATTTGCTTCAGATTT
CAGACTTCAGATGAGACCAAAACAAAGTACGTGTAACGTGTACTCTCTATCATGTTGGTGTGGA
TATAAATACATTATACCAGTCACACAATAATAGGTCTGGTGTCTATTCATTTATTCTTGTATTA
TACTAGTGACACAAAAATATGTCTGGTGTCTATTTATTTTGAAAGGTATTTATTGATTTGTTGG
TGACAATGCAATGCATGATGTGGCTTGCAGCTCCTTCGGTTCTTGCTTGTTTCACATTTTTTGG
TTTTTTGTGTACGTGTTTGTTAAGTCAAACATGAGAGGATAGATGGTCACTGCCTTTTTGTAGC
TTTGCGTTATGATATATGTGCTATGGTACAACCATAGTATTAAAAGAATATTTTTAAGAATATC
TGGAACAATCCAGATAAGTTTCTAAACATATGCATGGATGGTCTAAATGTTTGAAAAAATTTGG
TGGCTAACTACCATCTTTGTGAGCTCCTTTCACCATGTTCATTTTACTATACTTGTACCCAACC
CCCTAATAGGGAGTCTTTACCTCTTTCTCAGTTCTAAAAAAAAACATCTTCCTCAGTGTGTGAG
AGAACAAATTGACTAGCACATTAGCTGTGACTTTGTGAGATACTTTCATGTTAGCTGCCTCCTT
TTCCTCCCTTTATAGTGTGCATTCTAGTTGTTAATTAAACAGCTAGGACCATGCAGAGAAAAAA
AAACACAACACCTGCATTTGCTGACTTCCTTAGTTTCTTATTAGAGTAGCAATGCATATTTATC
ATGATCCATGGTGTGTTTGTTTGTTTCTTATTGGCTGGCCAAGCAGCTAAAGCATCTTTGACTT
ATTAGAGTATCCGTACAAAATCAAGCAACATCAAGACTGAAAGCAACTGGTTGAAGATCAACAT
CCATATTGTTTAGGAAAAAGAGTCAAGCAAATACCTAGTCTTATTATACAAAATAATTGAGTAA
TAATATTTCGGTGTGCATGCACTAACTTAAAAAACCTTATATGCATATGTGTCACCATGCAAAG
CACATGTACCTATGTACTATTGGTCTAGTGGGTATATACGTGGCCGGAACAGTACTAGAAACAA
AGTAAAAGATAATGTTTGAAACATCCAAACTAACACGCATGTGCATCACACCAAATTAAAGATT
AATTTAGAATACATATATACTTATCCTTACAATTAACCATGGGAATTAAGTTGTTAGTATTGTC
TAATAGAAATTAATTAAGTTCTATCACAATTACACGGGTACGGTGCATCTACTGTTATTATACG
CTGACACAGCACAGAACCCCTTATCCTGATTATTCATGGACTAGTTAAGCAGTCCTCCTACGAG
CGAATAATATTCCTTTTGGTTAATTTGCAATATATTGATCGCCTAGTAATTAGCGAATCGTACA
TATTTTTCGGGAAAAACAAATCGTACCTTTTTAATTACACCACCATATATAATAATGCTAATAC
TTATCCTCCTCGATCGTCGTAAACAATTTTTGTTTTGCAAAATCGTCATTCAGGATATATATAT
ATATATCTTCATTCTTCAGAATCCTAGAAAGTCCAAGCAAAACCTGCCTAACAACGGCTGACTA
ATTTCAAGCCGACGATGAATAGATGACTGATCAGTTCAAACCTGAGGCCAATCAAGCCCAAATG
GAACTCTACGTAGTCGATCAATCGAGTTCGATTACGACAGGCACGCCTGAATGAATTTGAAATG
ACAAAGACGATCGATCGCGATCAAAAAAGAGATCAAACTGACAGAATGGACACGAAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021