Detail information of Os12g0163800_circ_g.5


General Information
CircRNA Name Os12g0163800_circ_g.5
ID in PlantcircBase osa_circ_010561
Alias NA
Organism Oryza sativa
Position chr12: 3237848-3242413  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene Os12g0163800
Parent gene annotation Similar to ATP binding protein. (Os12t0163800-01)
Parent gene strand -
Alternative splicing Os12g0163800_circ_g.4 Os12g0163800_circ_g.6 Os12g0163800_circ_g.7 Os12g0163800_circ_g.8 Os12g0163800_circ_g.9 Os12g0163800_circ_g.10
Support reads 4
Tissues shoot, seed
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os12t0163800-01:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGGAACGCAGGGCGCCTATCAGGATCTTTTGCTTCTGCCAAGACCTTCTGATGGACTAAGACG
TCTTCAGCTTTGTCGACATTGATATCCAGTTGATAGctctggtgccatccatctgtatgttcca
gtttcagctgtcatgttacctccttgatcctgaaaacgagctacaccaaaatctgccactttca
caacctag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCTGGTGCCATCCATCTGTATGTTCCAGTTTCAGCTGTCATGTTACCTCCTTGATCCTGAAAA
CGAGCTACACCAAAATCTGCCACTTTCACAACCTAGAAAAATAATAATGAAGTTATTTATCAGT
TCATAGATATTTTCTCTCAAGTGCAAAGCAGATGGCTCCTGCACATACAAAAACACAAATGAAG
CATGATTATATTGCATCAGTACCATTTGCCCACTTGCATAAACTATACTATCTTGTCTTATTTT
TTCCCCTCATATGTTCATCAATAAAATGTTAAAGATTATAGGCTACGTACATGATCTTTGTCCA
TTAGAAGGTTTGCACTCTTTAAATCTCTATGGATAATACCCCTCTGATGCAAGTAACACATCCC
TCTGCATACATCAACTGCAAACTTCAGCAGAGTTGGAAGGTCCAAGACATTATGCTGCTTGTGC
ACAAAGTCATACAGGCTTCCTCCAGACATGTATTCTGAAAGATATAAAAGTAGATGATGAGCAT
TAGTAGGAATCTTCCAGTCACCAAGATATAAATTAAGCAAGAACCCGCTCTTTGTCACATAATA
ACAAGCATAATTATATGGAATTAAAAATTACATCTCACCAATATTGTGAAATTAATTAGCATTG
TGTAATAATTATTCAGCACATGCTTTATTTTTAGGAACAAACTATTCTTTGCAAATTCCCCGGT
GAGAACCAATTGATGTCATAAATCTTACCAGTAATTATGCAAAATTGTGGTGGTTTTGTGCATG
CACCAATGAATCGCACAACATTAGTATGCTGAACTTCCCTGAAAACAAGTATGGGAGATCAAGG
CAAGGCATAAATATTTAGTTATTGGTACTTGCATGAACTGGGTAATTTCAGACATTCTTAATCT
AAGAGCAGTAATATGCTCATGGCTAAGAATTGGATATGCTTAAACTATTCATTCACAATGGTAA
ATGCTAAAAAAGAATTATATAAACAAAACACCTTATTATAATGTTAAATACCTTAGAATATATA
CTTCCTGTGTGAACTCATTCCAAACATTCTTATTCAAATGCTCAGATCTTAGAATTTTAACAGC
AACATCCTCACCGAGATAAGTCCCATGATACCTTGACATAAGGATAACACACCATAAAAACAAA
GTGCAATAAATACAGTGATAAAACAACTCAGCAGTATACAATTGACTTACAAATCCCCACAAGA
TCCAGAAGCAATCATCCCTCCCATCTTCAGCAGTCGTTTGTCAATTTCCCATTCACCACCTTTT
ACTTGGAATGGCAGTGTTCTTTCTGCAGCTGATGAGTGAGATGAACCTGACCATGATCCCTGCA
TTTTCAGAGAGCACCAGCAAATATGCTGTTAGATTTGTCAAATGGAACAAGACATTGTATCATG
CATCAACTCCTTGCAAAAATACAAAATAGGATTATATCCGCATGGAAAATGCTTATTGCTTAGA
CGATCATAATATATATCACAAGTTACCTCATTCCTTAAAATGGACGCTTCCAGTGCCTTGTGCA
AACCATCAGTGTCCTGATCAACCATTGCAACGTTGGCATCATTTTAAAAAAACAGTTCATAATA
AAAGAACCAGAATGGCTGGCCAACTCATTGGCATAAAACTTCACAGAATTGGTTGTTTAGACAG
TATATCGTTGGTTGTCATACCAGACTGCTAACCAGCCGGTAGGTGGTTTTCAGGGCAGAATGGA
ATACTATTCCCCCACCCCCAAACACACATACCCCCCAAAAAATGAGACACTCCATAATATAATT
CTCATGCACACCATCAGATGGAGAATAAAACAGCATGTTATCATTATAACTTCCATAACCATGT
CTGTCTAAACTGAGGTAAGCCTCAAGACAAAAATGCAATGAGTAGATCGTGGCAAGCTCAGGAT
TAGTTCTCAAGGAAGGGAATTACAATGGTAGTAGTTCAAACTTAAGTCTATGAAAATGATTCCA
TCGTTTAGATGAATAAACCCTTTAACTATTCCAGCACTAGTAACCATTGTTTTCTAGGAATAGA
AGGCCAGACGAAAGACTTCAATACATCAGTTCTGCAATTTACATCTAGACAGTTCAGCAAATGA
CATGATAAGAACCAGATATTACCTCAATGGGCCAGCCATCAACAACAAAAACATCAAGAGAATA
GTTGTCAAATGTCGAGAAAACATGCGCTTCCCTGATGTTCAATCCAATGTCAGATAGCAAAGCA
GACAGCTGGCATAACATATTGCAGTTAGATGATAACGATATACTGTGAGCAAAAAGTCAAACGA
CTAGTAAGCACATGCTTAAATTGGAACAATGATTTAGAAAATGCCAATGTATCATGAGGTTAAG
TTAGAAGGCACATAAAATTGCTGACCTGACTAAGGAGCTTTGGCTTGTCAACAGTGGAGAAAAC
CACCTCATGAATGTGTGCGTATGATGTGTCCTGCCTGCACAATATACATAGCCAACTTAGCAAG
CCTATAAAAGGTCAAGATATCTCAAGCTTCTCTCTAGGCTATGTGCATGGGCATGTAATAGTGT
GTTCATGCAAGTCCACAAGTGGTGTTGACTTATTCAAGGAGATTTAGGGGATACATAACTTATG
TGGGATGGTTTACTTCACAAATACTTGAGGTTAGTACCGATATTCTGTATTTATGCATATTCTC
TATTTTTCTGGTGCAGAGTGCACTGACTATAGAAGTAAATGTATACAAACATACAAACACTATT
GTGTTAATCTGTATGGTTCCTATGCAATAAGGACTTAAGATAACTATAATGAAGATATGATGTA
TATCGAAGCTACAGAACTTTAGGTGCAACATATCAGAAGCATACAAAGGAAGCAGACAACAATG
AGTCAGGAAGGTTAGTATGTAAATTCTTGAGTGCACCAAGCTAAATGTTTAACCCTTTCTTACT
TCATTTTTTTCTGTAAAGAATGTCTGATTACAATGTTCCTTTCCCACACATAATAATGAGTGGA
AGACATTTTATCTACAATGACACATGATTTTAGGACCATCAGGATCTCCAATTCTCTACGGTGG
CACCCACTTGTCATGGAGAGATTATACGGGAGATGGGGTATAGTTTTTTCAACAAGCAGTGCCA
AATGCCAATTTGATCCAAGAGGGCACCACCTCATGGACCAAAACACCCCCATGACAAGCAGACT
CTACCACCACATTGTGTCCCATCTAGACGCTACATAGGCCAAAACCACTATTAAACGGACAGAT
AACAAGTTTTACCCGGTTTTCAGAGTTGAGTAGCAGGTTTTAGCCAGCTTTGGAGTTGATGGAC
GAAAATTAAACCACACCAAGAGTTACTGGACAAGAAAAATAATCTTTCCTTCCTAAAAAACAAT
GGAAGCAGCATCCTAGCACTGTGCATGATTACCTTACAGAGAGATCATCACCATCATCAGCCCC
ATCTTCAGATGCGTCAGAGTCATATGTCGGATCCACTTCTTCAATCTTTGATCAAAGTTTAGAG
TCAATTTGACAACTCCGATTTCTATTGGTGATACTAAAGATAAACAATCAGTAATGCATGGAAC
AAACATGTAGCATTGGCAAGATAAGAAAACATAAAATCTAAAAGCTAGAGTAACTTATCCCTCC
CAATTTCTCTATCAAGATCATCAAATATTGTAATGTTATATGTAGTATGCCACATAAAAACCAT
TTAATATCATAGCTAAAAATGTACTTCTCACGGACAGTATAGTAGGTGTGAGCATCATCCCACC
TGTGCTATGGCATTTTTCACCAAAGACAACCAGCTGCAATATATCATGTATATACTATATGAAC
AATGGTCAAGCATGTATTGACAAATACACCTTGTCATTTTCTTCAGTATTTAATAAGACAGTTC
AGAAAATCATGGCAACACTAGTGTTTGTCTTTGTACGACGGCCACGGCCCTGTTTACATATCAT
GTAGAGAAGCTCCCAATGATAGCTACACACAGTTACTTCTAATGAAAGAAATAAGAAAATTGTC
AGTCCACTCCATATCTTTTTAGATTGTCTACGGCAAAGCCTTTATTTAGTACAAAATCGAGTGA
TATACACATTGAACTGAATTATTCCTTGCTTCTTGTTGTGCTCATCTGTTTCACCATAAAATAA
TGTGTACTGTTCATTCAGAAACCTCCTTGAAATAGTGCAATGACAGCTGTACCATGAAATAATG
CTCTAAAGTTACATGGCAAAATTCATAATATTGGTGTTACACTATTCTTTTCAATCTAGAGTTC
TAGACTTTCCTGGCCATAATACCATTAAGTATGAACAATATGCAACCCATCATATGTAAACAGA
ATACAACTAGTAGCCACCAATCCACTAAAGGTGCTATCATTATCGCATAACACAAATTAGTTGC
TTCTACAATAGTCCAGATCAACATAAGAGTTTTACCCTCAAGAAACGAACATGGAACGCAGGGC
GCCTATCAGGATCTTTTGCTTCTGCCAAGACCTTCTGATGGACTAAGACGTCTTCAGCTTTGTC
GACATTGATATCCAGTTGATAG
Conservation Information
Conserved circRNAs NA
PMCS 0.108408629
Functional Information
Coding potential Y
Potential coding position 3239089-3242383(-)
Potential amino acid sequence MGGMIASGSCGDLYHGTYLGEDVAVKILRSEHLNKNVWNEFTQEVYILREVQHTNVVRFIGACT
KPPQFCIITEYMSGGSLYDFVHKQHNVLDLPTLLKFAVDVCRGMCYLHQRGIIHRDLKSANLLM
DKDHVVKVADFGVARFQDQGGNMTAETGTYRWMAPELSTGYQCRQS*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017