Detail information of AT1G15140_circ_g.2


General Information
CircRNA Name AT1G15140_circ_g.2
ID in PlantcircBase ath_circ_002635
Alias NA
Organism Arabidpsis thaliana
Position chr1: 5210549-5211071  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene AT1G15140
Parent gene annotation F9L1.8 protein
Parent gene strand -
Alternative splicing AT1G15140_circ_g.1
Support reads 1
Tissues aerial
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT1G15140.1:3
AT1G15140.3:2
AT1G15140.2:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGGTAAGCCATCCTATTCAGGTTCCTAGCCCCGTAATAGAGTCTTACGTCAGATCTTCTATCA
GCGCCAAATCCTGATTCGATTAGTGAGCGGATGGGGctcagccatttgtttctgtccgcacagc
accgctcccgtggccttgggagctgatagctgtttagcccttgcaaaagcagcctatacaacac
attatgta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCAGCCATTTGTTTCTGTCCGCACAGCACCGCTCCCGTGGCCTTGGGAGCTGATAGCTGTTTA
GCCCTTGCAAAAGCAGCCTATACAACACATTATGTATATATTAGTTTGATCCACATTGAGTTAC
AGCAGACTTGACTAAGGAGCACGTTTCTCAATCTCACCTGCACATATCCAGTTTCCCCTTTCCA
CCCATCATCTGGCTGTGATAATACCGGCACAACTTTGACACCCGCTGATTCCCACTCTTTAAAC
TTTTCCTACAAAATCAAGAGCGTTTCCAAGATGATTCTTCTGTAGATCAAAATGAGAGCGAGAG
ATAGGCTTTACGCTTATCATCAAAAGATTTTTATAATTCAAGCACACACATTTATATCTACTGA
CATCATGAATTGCAAAACAACTGAGAGAAAGAACCAAACCTGGTAAGCCATCCTATTCAGGTTC
CTAGCCCCGTAATAGAGTCTTACGTCAGATCTTCTATCAGCGCCAAATCCTGATTCGATTAGTG
AGCGGATGGGG
Conservation Information
Conserved circRNAs NA
PMCS 0.18398037
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017