Detail information of AT2G34420_circ_g.4


General Information
CircRNA Name AT2G34420_circ_g.4
ID in PlantcircBase ath_circ_016415
Alias NA
Organism Arabidpsis thaliana
Position chr2: 14522733-14522992  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRI
Parent gene AT2G34420
Parent gene annotation Chlorophyll a-b binding protein, chloroplastic
Parent gene strand -
Alternative splicing AT2G34420_circ_g.1 AT2G34420_circ_g.2 AT2G34420_circ_g.3 AT2G34420_circ_g.5 AT2G34420_circ_g.6 AT2G34420_circ_g.7 AT2G34420_circ_g.8 AT2G34420_circ_g.9 AT2G34420_circ_g.10 AT2G34420_circ_g.11 AT2G34420_circ_g.12 AT2G34420_circ_g.13
Support reads 6
Tissues NA
Exon boundary   No-No
Splicing signals   CT-GA
Number of exons covered AT2G34420.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCGAAAGCCTCGGGGTCAGTAGCGAGGCCCAATGGGTCGAAGCTGCCACCTGGGTAAAGCAAG
TCCTCTGCTTCTCCCAATGGACCATCTCCGGCGACTagttggtggcgaaggcccaagcgttgtt
gttgactgggtcggccaaatggtcggcgaggttctccaaaggtccctttccggtgacgatggct
tgaacgaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGTTGGTGGCGAAGGCCCAAGCGTTGTTGTTGACTGGGTCGGCCAAATGGTCGGCGAGGTTCTC
CAAAGGTCCCTTTCCGGTGACGATGGCTTGAACGAAGAATCCAAACATAGAGAACATAGCCAAC
CTTCCGTTCTTGAGCTCCTTCACCTTCAACTCTGCGAAAGCCTCGGGGTCAGTAGCGAGGCCCA
ATGGGTCGAAGCTGCCACCTGGGTAAAGCAAGTCCTCTGCTTCTCCCAATGGACCATCTCCGGC
GACT
Conservation Information
Conserved circRNAs NA
PMCS 0.860535764
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Sun et al., 2016