Detail information of Os05g0501600_circ_g.1


General Information
CircRNA Name Os05g0501600_circ_g.1
ID in PlantcircBase osa_circ_042150
Alias NA
Organism Oryza sativa
Position chr5: 24694758-24694907  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os05g0501600
Parent gene annotation Leucine-rich repeat, typical subtype containing protein. (Os05t0
501600-01)
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os05t0501600-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TACTACAACAAGCAGGCAGTGCGGTCACGCCGGTGCTCCAAGCCCCAGGGCGGCGGCGGCCGCC
ATGGCCGGGCCggcaacccggcgcagaggaacgtcggcgacgagcagctcaagaggcacgtgct
gcgcctcctgccgcacctcgtg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 150
Transcript exons: 24694758-24694907
GGCAACCCGGCGCAGAGGAACGTCGGCGACGAGCAGCTCAAGAGGCACGTGCTGCGCCTCCTGC
CGCACCTCGTGTACTACAACAAGCAGGCAGTGCGGTCACGCCGGTGCTCCAAGCCCCAGGGCGG
CGGCGGCCGCCATGGCCGGGCC

Genomic sequence GGCAACCCGGCGCAGAGGAACGTCGGCGACGAGCAGCTCAAGAGGCACGTGCTGCGCCTCCTGC
CGCACCTCGTGTACTACAACAAGCAGGCAGTGCGGTCACGCCGGTGCTCCAAGCCCCAGGGCGG
CGGCGGCCGCCATGGCCGGGCC
Conservation Information
Conserved circRNAs NA
PMCS 0.132222222
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study