Detail information of Os03g0167700_circ_g.2


General Information
CircRNA Name Os03g0167700_circ_g.2
ID in PlantcircBase osa_circ_018103
Alias NA
Organism Oryza sativa
Position chr3: 3659165-3660972  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene Os03g0167700
Parent gene annotation Similar to Serine/threonine protein phosphatase PP2A-3 catalytic
subunit (EC 3.1.3.16). (Os03t0167700-01)
Parent gene strand -
Alternative splicing Os03g0167700_circ_g.1 Os03g0167750_circ_g.1 Os03g0167700_circ_g.3 Os03g0167700_circ_g.4 Os03g0167700_circ_g.5
Support reads 1
Tissues seed
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0167700-01:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TACCCAGCATAACAGTGAGAAAAGAACCGGCAGTATGCGATACCTGAACATTGCTTTCCTCCAT
CAATATCTCCTTGGCCTTCTCGCACAGTGCTTTAACcagtgctgtcagtggaaaatagtcaaat
aaatccgtgaatatcttccatacatttgcattgccatacctggtttgaaagaagggtcaacaac
acaaatta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGTGCTGTCAGTGGAAAATAGTCAAATAAATCCGTGAATATCTTCCATACATTTGCATTGCCA
TACCTGGTTTGAAAGAAGGGTCAACAACACAAATTAAAAATATGACTCCATTTCAAACATCTAG
TAGCAAATCATTGTTGCAAATTTCACTTCTATAAATTAACAAACAATATCACTGTTTTGTTTGA
AACATATTGAATTAATGATATGTACTACCACATAGGTTCAAAAGGTACAGAACTCTAATATACA
AACAACACAAAACCTATATACTACCGCACAGAAAGAAAAAAAGGGCACATGATACCAAATAGAT
TCCACATATACTAAAACTTTGTTCGTCTGTCTATTATACTGAGACAAGGACAAGAAGTACCACA
TAACTCTAGGATCAGACAGAACATGCATAGAGTTTCTGCCATGGCAGCAATGATGCAGTTCATA
CTGAACAGCCTACAAGGCTAGACCTGGAACAGGATTAAGATTAATTTTCATGAAGCACCTAAAC
AAACTCACTTTCGTAAACATTCGTCGTAGAATCCATAAACCTGTGTGATCTGCAATCATCATAA
AATAATATTTTCAGTTTAACATAGACATAACTAATTCACCATTATGACAGACAGACGATAATAA
AACAAACTGTGCTAAACAGAAACCAGAAGAATTCAACAAATTTGCTCAAATTTCTAATCAACTG
AGAAAATTGCGGCCAAGTCTGCACATAGTCATTGAGAAAAGTTGAACAGCACCTGCCGGCTCTC
GTGATTTCCGCGAAGGATTGTAATCCGATGTGGGTGACGCACCTTCAGCGCTACCAAAAGCTGG
ATAAGGAATACCACTCAGTAGTGCTTACACATAATGACATGATCTCAAACATAAAACAATTGAA
ATATTTGAAAGAATTCCAGTAATCGAATTTTGTTGCTGGCCAATAAGAACAAATAAATCTGGTA
TGTGAAACTTGACAGCTTCTGTAAAACTGTATATAAATACTCATCAAAGAAAATAAGTAGGTTA
ACTCTTACAGTAACAGTCTCAACAGAGTAATAGCCACGATCCACATAATCCCCCATAAATAAAT
AATTAGTATCTGGGCACTGAAACAAAGAAGAACAAATATATTAAGTATCTTTAAGAACAGAATA
ACGAAAGGAAGATTTCAAAGTATGGTAGCAAAAGTAAATGCAAATAGTACCTTCCCACCGATCC
GAAAAAGTTCTACAAGATCATGGAATTGTCCGTGAATATCACCACAAATCGTTACTGGGCTTTT
GACAGGCTGCATAACCCAAAAAAAAAAAAGGCAAAACCTTAAAACCAGTACTCATCTACCTTAC
CAAATTACCATGGAACAGAACATGCAAATATTTTGAGAACGTCTTAGCAGAATTGTATGTGCAC
ATACTATGAGCTATCTGAATGGCATGTAAAAGAGGGGGTAAAAATTAAGGTGATGAAAATTGAA
TGGAAGGAGGAAGACTTGAATTCCTGTGTTTATTTTAGTCATCAGCATTGGCAGAATTATGGTT
GGATTGAAAGGCACAGAAATGTATGACTAAAACATATCAAAGGACCAACTAACTTGTGTAACAC
TATGAAGTACCCTTGCTCAAATACAATGCCAAAACCATAGTGCAGGTTCAATCAACTGTTGAAG
AAGCAATAAGGAAATCCTGTCACACTCACACCTATCCTGAAATATACCCAGCATAACAGTGAGA
AAAGAACCGGCAGTATGCGATACCTGAACATTGCTTTCCTCCATCAATATCTCCTTGGCCTTCT
CGCACAGTGCTTTAAC
Conservation Information
Conserved circRNAs osi_circ_013926
PMCS 0.133535458
Functional Information
Coding potential Y
Potential coding position 3660401-3659191(+)
3660938-3659167(-)
Potential amino acid sequence MELSVNITTNRYWAFDRLNIAFLHQYLLGLLAQCFNQCCQWKIVK*(+)
MEESNVQPVKSPVTICGDIHGQFHDLVELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVAL
KVRHPHRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVKALCEKAK
EILMEESNVQPVKSPVTICGDIHGQFHDLVELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLL
VALKVRHPHRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVKALCE
KAKEILMEESNVQPVKSPVTICGDIHGQFHDLVELFRIGGKCPDTNYLFMGDYVDRGYYSVETV
TLLVALKVRHPHRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVKA
LCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLVELFRIGGKCPDTNYLFMGDYVDRGYYSV
ETVTLLVALKVRHPHRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTAL
(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017