Detail information of AT2G23070_circ_g.7


General Information
CircRNA Name AT2G23070_circ_g.7
ID in PlantcircBase ath_circ_014522
Alias At_ciR4347
Organism Arabidpsis thaliana
Position chr2: 9825055-9826157  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ
Parent gene AT2G23070
Parent gene annotation Casein kinase II subunit alpha-4, chloroplastic
Parent gene strand -
Alternative splicing AT2G23070_circ_g.1 AT2G23070_circ_g.2 AT2G23070_circ_g.3 AT2G23070_circ_g.4 AT2G23070_circ_g.5 AT2G23070_circ_g.6 AT2G23070_circ_g.8 AT2G23070_circ_g.9
Support reads 3
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G23070.1:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATAACACATTTCTCGTTATCAGTAGCATGAATGCCTTCAAAGACCTCACTGTATTTTCCCCTT
CCTACCTTCCTCACCACCTCATAATCATCCTGTACAcattccagcaaacatacacccaagactc
cataggtctaaggaataatcatagtcctgtaaatccaccagcagctctggacccttaaagtacc
tgctcatc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATTCCAGCAAACATACACCCAAGACTCCATAGGTCTAAGGAATAATCATAGTCCTGTAAATCC
ACCAGCAGCTCTGGACCCTTAAAGTACCTGCTCATCAAATATGAAGTGAGAAATGATAATAGTA
TACATCAGCTAGACGAAGTTAGATAATATGTTTCAACTAATCTCAAGAGCTCAATGCATGCAAT
CTTCAACATTTCTTATCTAGACTCTCTATGAGCAGAAATTTAGCAACTGCAACAAATAGAATCT
TGCAGAGGAGAGATTAGCAGATAGCCAAAAGGAACTACCTTGAAGCAACACGGACATTGTATTC
TTTCCCAGGATGATAGAATTCTGCCAAACCCCAGTCAATTAAACGAAGTTTTCGCTGCTCGTGA
TCAATCATGACATTATGTGGTTTCACATCTCTGTGCATGATTCCACGTGAATGGCAGAAATCCA
ACGCCTGCATAAATGTTAAAAAGAAACAACAAACAGCATCAGAAACAAATTCGTACCCTTTATA
ACTGAAGGCTAGTGGATTCAAAAGTCAAGTAAGGTAAACAACAGTGTATGACGCTATACATCTA
TGATATATCTACCGATTACTTTTGCCAATTGCCAAAGCCGCAAAGAAAATCATGGTCTACAATT
CAGGAAACTGAATAATTACCTTTAGAAGTTCAAAAATGTAATATCGAACATCATAGTCTGAGAG
AGTTGGATAGAGAACTTTGAAATCTTTATTGTTCACATGTTCAAATATCAAGCTGGGCGTCTTA
GACTGCTGATCTCTAACAATGTCGAGCAATTTTACAATATTAGGCCCACCGCAGAGGTTCTGCA
GAATCTTAATCTCTCTCTTAATCTGCGTCAAGGAGAAGCAAAATATGTTAGAGAATAATTCAAA
CCAAGTGAAGGGCCAGAAACACACTTCATTCTGAGCACAATTGAGATAAAAACAAGCAAGCGGC
TGTATCTACTCACCTTCTTCTTCTTCACAGGCTTCAAAATCTTGATAACACATTTCTCGTTATC
AGTAGCATGAATGCCTTCAAAGACCTCACTGTATTTTCCCCTTCCTACCTTCCTCACCACCTCA
TAATCATCCTGTACA
Conservation Information
Conserved circRNAs NA
PMCS 0.193425592
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015