Detail information of BGIOSGA030090_circ_g.5


General Information
CircRNA Name BGIOSGA030090_circ_g.5
ID in PlantcircBase osi_circ_018862
Alias Chr09:6356358_6356976(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr9: 5323287-5323905  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA030090
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA030090_circ_g.1 BGIOSGA030090_circ_g.2 BGIOSGA030090_circ_g.3 BGIOSGA030090_circ_g.4
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TG
Number of exons covered BGIOSGA030090-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGTTTATCAAAGCACTTATGGTTGGTCGATACACTACCAAAGTCACATAGTTTCCAGGCCCCA
CCACCACCAAGAAGAATATTTTCAGCCTTTAGGTCCcctgtgtaatgtctggtctgacatctgg
agaagattgaagcatgtctttgatcagacttgtaatgggggaactgtactttggtaactctggg
atacgata
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGTGTAATGTCTGGTCTGACATCTGGAGAAGATTGAAGCATGTCTTTGATCAGACTTGTAAT
GGGGGAACTGTACTTTGGTAACTCTGGGATACGATAGTTTCCATTGAGTATCTGGAGCTTTGAT
TCTCCATCAAATGCTGATTTTAAGTAGCAGATTCTATACAGGAGACATCCAAGAGCCTGCAAAG
AATAGCAAGTTAAAAAATCATTAATTAGTAATAAGATACAACTACGTATAATATAATTTGTACC
ATTCAATCAACTTTCAATTAAAAACATAATATTGATGTACAATTAGTACAGAGAGGATTTACCC
ATATGTCTACTTTCTCACTGATAACCTCTCTCCGATACAAGTCCCACATCTACAATCAGTAAAC
ATGTTAACAAAAGGTAGATAAGAAGAAATTTCTAAAAAAGAGCTCAAAACAGGTATGTCCAATC
TGAACCTCGGGAGCTCTATATGCAGGAGTTGTGTGCTTTCGAATATTATCCTCTTCAATACCCA
TCTCCTCAGGTTTATCAAAGCACTTATGGTTGGTCGATACACTACCAAAGTCACATAGTTTCCA
GGCCCCACCACCACCAAGAAGAATATTTTCAGCCTTTAGGTCC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021