Plant Circular RNA Database

Detail information of Os03g0699200_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os03g0699200_circ_g.2
					
						ID in PlantcircBase
						osa_circ_021105
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr3: 28029996-28031684  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os03g0699200						
					
						Parent gene annotation
						
							BRCT domain containing protein. (Os03t0699200-01)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os03g0699200_circ_g.1 Os03g0699200_circ_g.3 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os03t0699200-01:5

General Information
CircRNA Name	Os03g0699200_circ_g.2
ID in PlantcircBase	osa_circ_021105
Alias	NA
Organism	Oryza sativa
Position	chr3: 28029996-28031684 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os03g0699200
Parent gene annotation	BRCT domain containing protein. (Os03t0699200-01)
Parent gene strand	+
Alternative splicing	Os03g0699200_circ_g.1 Os03g0699200_circ_g.3
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os03t0699200-01:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AGGTCAAAAGATCACCTGGCTAACTCCACATGCTCTTCAGCAAGTTTTAACTGATGACGTTGAC
TTCAATGTGATGCTTACCTTTTTGGAATTCTATGAGgaagctatgcattctcaagggcgtcttt
ccccgggatccaaagaagaaggtggaagggaaccacaagacctactaccacatgaaggatattg
ccttcctg

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 571
Transcript exons: 28029996-28030124,28030842-28030961,28031043-28031168,28
031385-28031469,28031574-28031684
GAAGCTATGCATTCTCAAGGGCGTCTTTCCCCGGGATCCAAAGAAGAAGGTGGAAGGGAACCAC
AAGACCTACTACCACATGAAGGATATTGCCTTCCTGGCCCATGATCCCTTGATTGAGAAGTTTA
GAGAAATCAAGGTCCACAGGAAGAAGGTCAAAAAGGCGTTTGCTAAGAAAAATAAAGATCTTGC
AGACAGATTATTGAACCGACCACCAACTTACAAACTTGACAGGCTTATTCTTGAAAGATATCCA
ACTTTTGTTGATGCTCTTCGTGACTTGGATGATTGCCTAACAATGGTGCATCTTTTTGCTGCGT
TGCCTGCTGTTGAAGGTGAACGTGTGCAAGTTCAGCGGATTCATAATTGCCGCAGGTTGAGCCA
TGAATGGCAAGCATATATATCTCGAACTCATTCCCTGCGAAAGACATTTATATCCGTCAAGGGC
ATATATTATCAAGCTGAAGTTCAAGGTCAAAAGATCACCTGGCTAACTCCACATGCTCTTCAGC
AAGTTTTAACTGATGACGTTGACTTCAATGTGATGCTTACCTTTTTGGAATTCTATGAG
						
					

						Genomic sequence
						
							GAAGCTATGCATTCTCAAGGGCGTCTTTCCCCGGGATCCAAAGAAGAAGGTGGAAGGGAACCAC
AAGACCTACTACCACATGAAGGATATTGCCTTCCTGGCCCATGATCCCTTGATTGAGAAGTTTA
GGTACTTAAGTTTTCTTGCAAAAGGTCTACCATCTGTGTTTTTTTTTGGCGGCTACAGAAGTAT
TCAGTATTCACTCACTGAGCATTTGAATTGCATGCCTTTTTGGTTGATTGCACATTTCTCTGTG
CAATTAAGGGCATATAATGTATCACTATCACAAAATTTAGCTGCAGACATATTTAATTTTTAAT
GAGATAACAATGCTTTCAATTTTCTTATTTGTTATTAGGCCACTGAGATAGGCAATATGAAAAT
ATCTTAATTGTGCTAGTGATCGGTTTGTGTTGTGTTCTTGTTATTTGATTTGTTTGCTGCAATT
GTGCAATTTGTTTCTGTCACAGTTTATGCAGCGGAGAAAATGGCAAGCAAGATAGAAACTTGTA
TTTTATTACTGAATACAATTGAGGAAATAATTATAATGTAGGTTTTCAGAGAGCCATTAGCTAG
GCCATGTGAATTATTCTCCTCGGTGCTTCATCAATGATATTTTGATGGTTGGCAGAATGGCAGA
TAGACTAGTTGCTCACAATTACTTGATCGTTGACAAGGGAATCATAATTCATGCTTTATATATA
ATCTAGAGTTTCATTAGAACTTTAGTTGATACAGTGTGGTGCATGTTGTCTTTGCATTAAAAAG
TGTGAGTTATAAGACCATGCTATTCTTGGTTTGTGATGTCTCCACTCTTAATGACATTTCATTG
TTGTTTGACTTCAGAGAAATCAAGGTCCACAGGAAGAAGGTCAAAAAGGCGTTTGCTAAGAAAA
ATAAAGATCTTGCAGACAGATTATTGAACCGACCACCAACTTACAAACTTGACAGGCTTATTCT
TGAAAGGTACCAGGTTTAAAGTGATTTGCTGATGACATCCATACCGTATTTGTTTCTATAAATC
ATCCCCATATTTTTGCTTTACAGATATCCAACTTTTGTTGATGCTCTTCGTGACTTGGATGATT
GCCTAACAATGGTGCATCTTTTTGCTGCGTTGCCTGCTGTTGAAGGTGAACGTGTGCAAGTTCA
GCGGATTCATAATTGCCGCAGGTATGCTCTGTTGTAAATGAATCCCCTCCCTCAAATTCACACA
CAACACTCCCAGCCAAGGGGCTCTTGTAGTTTCCTAGTTCATTTGTTCATCATGCTACAAGTCT
ATGACATTTGCCCCATCTTTATTGCTGCTATAATGAATTGCTGTACCTGACTTTGTTTGGCGTT
GCTAATACCTTTTATTAATTTGGGGGACATGTTTGTACTTTGTAGGTTGAGCCATGAATGGCAA
GCATATATATCTCGAACTCATTCCCTGCGAAAGACATTTATATCCGTCAAGGGCATATATTATC
AAGTAAGCTTGTGTAGTTATGTCTACTTGCAGTCCTTGCCTTTAAAATCACTGTAACTGTGCAT
GCTATAGTATATATATTTATATAATATAACTACTTTTTGCAGGCTGAAGTTCAAGGTCAAAAGA
TCACCTGGCTAACTCCACATGCTCTTCAGCAAGTTTTAACTGATGACGTTGACTTCAATGTGAT
GCTTACCTTTTTGGAATTCTATGAG
						
					

			
		

Sequences
Splice junction sequence	AGGTCAAAAGATCACCTGGCTAACTCCACATGCTCTTCAGCAAGTTTTAACTGATGACGTTGAC TTCAATGTGATGCTTACCTTTTTGGAATTCTATGAGgaagctatgcattctcaagggcgtcttt ccccgggatccaaagaagaaggtggaagggaaccacaagacctactaccacatgaaggatattg ccttcctg
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 571 Transcript exons: 28029996-28030124,28030842-28030961,28031043-28031168,28 031385-28031469,28031574-28031684 GAAGCTATGCATTCTCAAGGGCGTCTTTCCCCGGGATCCAAAGAAGAAGGTGGAAGGGAACCAC AAGACCTACTACCACATGAAGGATATTGCCTTCCTGGCCCATGATCCCTTGATTGAGAAGTTTA GAGAAATCAAGGTCCACAGGAAGAAGGTCAAAAAGGCGTTTGCTAAGAAAAATAAAGATCTTGC AGACAGATTATTGAACCGACCACCAACTTACAAACTTGACAGGCTTATTCTTGAAAGATATCCA ACTTTTGTTGATGCTCTTCGTGACTTGGATGATTGCCTAACAATGGTGCATCTTTTTGCTGCGT TGCCTGCTGTTGAAGGTGAACGTGTGCAAGTTCAGCGGATTCATAATTGCCGCAGGTTGAGCCA TGAATGGCAAGCATATATATCTCGAACTCATTCCCTGCGAAAGACATTTATATCCGTCAAGGGC ATATATTATCAAGCTGAAGTTCAAGGTCAAAAGATCACCTGGCTAACTCCACATGCTCTTCAGC AAGTTTTAACTGATGACGTTGACTTCAATGTGATGCTTACCTTTTTGGAATTCTATGAG
Genomic sequence	GAAGCTATGCATTCTCAAGGGCGTCTTTCCCCGGGATCCAAAGAAGAAGGTGGAAGGGAACCAC AAGACCTACTACCACATGAAGGATATTGCCTTCCTGGCCCATGATCCCTTGATTGAGAAGTTTA GGTACTTAAGTTTTCTTGCAAAAGGTCTACCATCTGTGTTTTTTTTTGGCGGCTACAGAAGTAT TCAGTATTCACTCACTGAGCATTTGAATTGCATGCCTTTTTGGTTGATTGCACATTTCTCTGTG CAATTAAGGGCATATAATGTATCACTATCACAAAATTTAGCTGCAGACATATTTAATTTTTAAT GAGATAACAATGCTTTCAATTTTCTTATTTGTTATTAGGCCACTGAGATAGGCAATATGAAAAT ATCTTAATTGTGCTAGTGATCGGTTTGTGTTGTGTTCTTGTTATTTGATTTGTTTGCTGCAATT GTGCAATTTGTTTCTGTCACAGTTTATGCAGCGGAGAAAATGGCAAGCAAGATAGAAACTTGTA TTTTATTACTGAATACAATTGAGGAAATAATTATAATGTAGGTTTTCAGAGAGCCATTAGCTAG GCCATGTGAATTATTCTCCTCGGTGCTTCATCAATGATATTTTGATGGTTGGCAGAATGGCAGA TAGACTAGTTGCTCACAATTACTTGATCGTTGACAAGGGAATCATAATTCATGCTTTATATATA ATCTAGAGTTTCATTAGAACTTTAGTTGATACAGTGTGGTGCATGTTGTCTTTGCATTAAAAAG TGTGAGTTATAAGACCATGCTATTCTTGGTTTGTGATGTCTCCACTCTTAATGACATTTCATTG TTGTTTGACTTCAGAGAAATCAAGGTCCACAGGAAGAAGGTCAAAAAGGCGTTTGCTAAGAAAA ATAAAGATCTTGCAGACAGATTATTGAACCGACCACCAACTTACAAACTTGACAGGCTTATTCT TGAAAGGTACCAGGTTTAAAGTGATTTGCTGATGACATCCATACCGTATTTGTTTCTATAAATC ATCCCCATATTTTTGCTTTACAGATATCCAACTTTTGTTGATGCTCTTCGTGACTTGGATGATT GCCTAACAATGGTGCATCTTTTTGCTGCGTTGCCTGCTGTTGAAGGTGAACGTGTGCAAGTTCA GCGGATTCATAATTGCCGCAGGTATGCTCTGTTGTAAATGAATCCCCTCCCTCAAATTCACACA CAACACTCCCAGCCAAGGGGCTCTTGTAGTTTCCTAGTTCATTTGTTCATCATGCTACAAGTCT ATGACATTTGCCCCATCTTTATTGCTGCTATAATGAATTGCTGTACCTGACTTTGTTTGGCGTT GCTAATACCTTTTATTAATTTGGGGGACATGTTTGTACTTTGTAGGTTGAGCCATGAATGGCAA GCATATATATCTCGAACTCATTCCCTGCGAAAGACATTTATATCCGTCAAGGGCATATATTATC AAGTAAGCTTGTGTAGTTATGTCTACTTGCAGTCCTTGCCTTTAAAATCACTGTAACTGTGCAT GCTATAGTATATATATTTATATAATATAACTACTTTTTGCAGGCTGAAGTTCAAGGTCAAAAGA TCACCTGGCTAACTCCACATGCTCTTCAGCAAGTTTTAACTGATGACGTTGACTTCAATGTGAT GCTTACCTTTTTGGAATTCTATGAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.237537152

Conservation Information
Conserved circRNAs	NA
PMCS	0.237537152

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							28030076-28030100(+)
28031681-28030100(+)
28030009-28031633(-)
						
						Potential amino acid sequence
						
							MKDIAFLAHDPLIEKFREIKVHRKKVKKAFAKKNKDLADRLLNRPPTYKLDRLILERYPTFVDA
LRDLDDCLTMVHLFAALPAVEGERVQVQRIHNCRRLSHEWQAYISRTHSLRKTFISVKGIYYQA
EVQGQKITWLTPHALQQVLTDDVDFNVMLTFLEFYEEAMHSQGRLSPGSKEEGGREPQDLLPHE
GYCLPGP*(+)
MRKLCILKGVFPRDPKKKVEGNHKTYYHMKDIAFLAHDPLIEKFREIKVHRKKVKKAFAKKNKD
LADRLLNRPPTYKLDRLILERYPTFVDALRDLDDCLTMVHLFAALPAVEGERVQVQRIHNCRRL
SHEWQAYISRTHSLRKTFISVKGIYYQAEVQGQKITWLTPHALQQVLTDDVDFNVMLTFLEFYE
EAMHSQGRLSPGSKEEGGREPQDLLPHEGYCLPGP*(+)
MHSFLIEFQKGKHHIEVNVIS*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	28030076-28030100(+) 28031681-28030100(+) 28030009-28031633(-)
Potential amino acid sequence	MKDIAFLAHDPLIEKFREIKVHRKKVKKAFAKKNKDLADRLLNRPPTYKLDRLILERYPTFVDA LRDLDDCLTMVHLFAALPAVEGERVQVQRIHNCRRLSHEWQAYISRTHSLRKTFISVKGIYYQA EVQGQKITWLTPHALQQVLTDDVDFNVMLTFLEFYEEAMHSQGRLSPGSKEEGGREPQDLLPHE GYCLPGP(+) MRKLCILKGVFPRDPKKKVEGNHKTYYHMKDIAFLAHDPLIEKFREIKVHRKKVKKAFAKKNKD LADRLLNRPPTYKLDRLILERYPTFVDALRDLDDCLTMVHLFAALPAVEGERVQVQRIHNCRRL SHEWQAYISRTHSLRKTFISVKGIYYQAEVQGQKITWLTPHALQQVLTDDVDFNVMLTFLEFYE EAMHSQGRLSPGSKEEGGREPQDLLPHEGYCLPGP(+) MHSFLIEFQKGKHHIEVNVIS*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os03g0699200_circ_g.2

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