Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os02g0139700_circ_g.1 |
ID in PlantcircBase | osa_circ_013078 |
Alias | Os_ciR7810 |
Organism | Oryza sativa |
Position | chr2: 2129281-2132972 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, find_circ |
Parent gene | Os02g0139700 |
Parent gene annotation |
Similar to Cycloartenol synthase. (Os02t0139700-01) |
Parent gene strand | - |
Alternative splicing | Os02g0139500_circ_ag.1 Os02g0139700_circ_g.2 |
Support reads | 2/2 |
Tissues | root/root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os02t0139700-01:10 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.110877271 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
2132912-2129511(+) 2132925-2129315(+) 2132965-2129283(-) |
Potential amino acid sequence |
MWSLNASEFGSSIQQASIFNTCWGNSPSSDCKLIKTFAARCKGIGSLSACPASIRASMAQPVFT A*(+) MPLSLDLQSSKQAYLILAGEIHHLPIVS*(+) MLACWIEDPNSEAFKLHIPRVHDYLWIAEDGMKMQGYNGSQLWDTAFTVQAIVATGLIEEFGPT LKLAHGYIKKTQVIDDCPGDLSQWYRHISKGAWPFSTADHGWPISDCTAEGLKAALLLSKISPD IVGEAVEVNRLYDSVNCLMSYMNDNGGFATYELTRSYAWLELINPAETFGDIVIDYPYVECTSA AIQALTAFKKLYPGHRKSEIDNCISKAASFIEGIQKSDGSWYGSWAVCFTYGTWFGVKGLVAAG RTFKNSPAIRKACDFLLSKELPSGGWGESYLSSQDQVYTNLEGKRPHAVNTGWAMLALIDAGQA ERDPIPLHRAAKVLINLQSEDGEFPQQVLNMLACWIEDPNSEAFKLHIPRVHDYLWIAEDGMKM QGYNGSQLWDTAFTVQAIVATGLIEEFGPTLKLAHGYIKKTQVIDDCPGDLSQWYRHISKGAWP FSTADHGWPISDCTAEGLKAALLLSKISPDIVGEAVEVNRLYDSVNCLMSYMNDNGGFATYELT RSYAWLELINPAETFGDIVIDYPYVECTSAAIQALTAFKKLYPGHRKSEIDNCISKAASFIEGI QKSDGSWYGSWAVCFTYGTWFGVKGLVAAGRTFKNSPAIRKACDFLLSKELPSGGWGESYLSSQ DQVYTNLEGKRPHAVNTGWAMLALIDAGQAERDPIPLHRAAKVLINLQSEDGEFPQQVLNMLAC WIEDPNSEAFKLHIPRVHDYLWIAEDGMKMQGYNGSQLWDTAFTVQAIVATGLIEEFGPTLKLA HGYIKKTQVIDDCPGDLSQWYRHISKGAWPFSTADHGWPISDCTAEGLKAALLLSKISPDIVGE AVEVNRLYDSVNCLMSYMNDNGGFATYELTRSYAWLELINPAETFGDIVIDYPYVECTSAAIQA LTAFKKLYPGHRKSEIDNCISKAASFIEGIQKSDGSWYGSWAVCFTYGTWFGVKGLVAAGRTFK NSPAIRKACDFLLSKELPSGGWGESYLSSQDQVYTNLEGKRPHAVNTGWAMLALIDAGQAERDP IPLHRAAKVLINLQSEDGEFPQQVLNMLACWIEDPNSEAFKLHIPRVHDYLWIAEDGMKMQGYN GSQLWDTAFTVQAIVATGLIEEFGPTLKLAHGYIKKTQVIDDCPGDLSQWYRHISKGAWPFSTA DHGWPISDCTAEGLKAALLLSKISPDIVGEAVEVNRLYDSVNCLMSYMNDNGGFATYELTRSYA WLELINPAETFGDIVIDYPYVECTSAAIQALTAFKKLYPGHRKSEIDNCISKAASFIEGIQKSD GSWYGSWAVCFTYGTWFGVKGLVAAGRTFKNSPAIRKACDFLLSKELPSGGWGESYLSSQDQVY TNLEGKRPHAVNTGWAMLALIDAGQAERDPIPLHRAAKVLINLQSEDGEFPQQ(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015;Chu et al., 2017 |