Detail information of Os02g0139700_circ_g.1


General Information
CircRNA Name Os02g0139700_circ_g.1
ID in PlantcircBase osa_circ_013078
Alias Os_ciR7810
Organism Oryza sativa
Position chr2: 2129281-2132972  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os02g0139700
Parent gene annotation Similar to Cycloartenol synthase. (Os02t0139700-01)
Parent gene strand -
Alternative splicing Os02g0139500_circ_ag.1 Os02g0139700_circ_g.2
Support reads 2/2
Tissues root/root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os02t0139700-01:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATCTTCTGCAATCCATAGGTAATCGTGGACTCTTGGAATGTGGAGTTTGAATGCCTCTGAGTT
TGGATCTTCAATCCAGCAAGCAAGCATATTTAATACttgctggggaaattcaccatcttccgat
tgtaagttgatcaaaaccttcgctgctcgatgcaaaggaattggatctctctcagcctgcaaga
ggaaagta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTGCTGGGGAAATTCACCATCTTCCGATTGTAAGTTGATCAAAACCTTCGCTGCTCGATGCAAA
GGAATTGGATCTCTCTCAGCCTGCAAGAGGAAAGTACTATCACGAATAAGCATATGTATCATTT
TACGATAACTGAAAAGTCAACCATACACAAAAATATATTTAACAAAAGACAAACCTGCCCTGCA
TCGATTAGGGCTAGCATGGCCCAACCAGTGTTCACCGCATGAGGTCGCTTCCCTTCGAGATTGG
TATAAACCTATTTGAAAACAAGCCACGAGATGGTTAAAGCAAAGATGAAACCTGTGTAAATTAA
GAATCAATACAATACCTGATCAATACAGTATTTCAAGTGCTGTCTATGTGCAAGACAATGTCCA
ACATATTATTTGTAAAGGTAATGTTCTAATATGTATAAAAATTCTTACATGCCACATGGATTAC
AAAGAAAAGAAATACACCTTAATAGTTGATTCCCAAAAATATATCATTTGTTGTTACATATGAA
AGCATGTTGGTAGTAGTCACTACTAATTTAATCTTTTAAGACTGGAAGAAATTCAAGTGACTAA
GCAGGTGGCACAAAAAAACAGCAAAGAACCCTGCAACACATTATAACCTACCTGTGCGCCATGC
AGAAAAGAGCAATGGCATGAAATTTAGCATCCTACTCTATCCAGTACAACAAAATGTAGCACCA
CAAGGTTCTAGTTGTATCCCGATTGTAGGGAAGTTCTCTCATGAGTTCATGTCCACTTGTTAAA
ACTTTACATGTTTTGAAGCATTTATCCCAAACAACAGGTGATATTGATCAGAGCACCTGGTTAT
CAACATTATAATAGATGGATGCGATCCAGTAAACAAGATTGAAAGCATATCCATGATACAGAAA
AAAAAAAAGTAAAGAATAGTAACATTGTGCAAATTTCATAGAAATGAATTTACCTGATCTTGGG
ATGACAAATAGCTTTCTCCCCAGCCTCCAGAAGGAAGCTCTTTTGACAACAAAAAGTCACATGC
CTTTCTGATTGCAGGACTGTTTTTGAATGTCCTACCAGCAGCAACTAATCCCTTTACACCAAAC
CATGTGCCATAGGTAAAACAAACAGCCCAAGAACCATACCTGTTGGAAAATACAGAGTGAACAA
TGTAGACAATTTTTTTTTTGACCAAGGGCAGTAGACAATGTAGACAATTATATGCACGCAATGT
TCTTATTGTTTCATGTGAAGTCCTTGTACTAACCATGAACCATCGCTTTTTTGAATACCCTCAA
TAAAGCTAGCAGCTTTGCTTATACAGTTGTCTATTTCACTCTTGCGGTGTCCAGGGTAGAGCTT
TTTAAATGCTGTCAGGGCCTGAATTGCTGCTGAAGTGCATTCCACATAACTATAAATTTTATAC
ACATACAAAGGAGAGAAGGAAAGAAAGATCAGTTCACCTTCTACATGGCAAAGCAAGAAAAGAG
GACAATGGATGGGTTGTAATGTCTTACGGATAATCAATCACAATGTCCCCAAAGGTCTCAGCAG
GATTGATAAGCTGGAAAAGTTCAATAACGCGTGTCAATATTCATGAAACATAGTCAACAGTCGC
ATGGAAGGATGTTCCATAGTCAATATAAAAATATTACAGCCAATGGTTAATTGTCCTTTTCAAA
CAAAGAAAGCATCTAATCAAAGAGCTCAACAAATCTTTATTATATTGAACAAGATTACAAGAAC
AATTAACAAATTTTTAGGTGCCATCTTTTGAGTCAGCAACTTCCCAGTTTTGATGTCAGCGCAG
AAATTGACTTGCAGCACTGCTTGCCTAGACAACAAATAAGAGAAGGATAGTCCTCAAATAAGAT
AATTATACTCACCTCCAGCCAGGCATAAGACCTTGTGAGTTCATATGTTGCAAATCCACCATTA
TCATTCTGTCAAGAGTACAAGGATCTGTAAGGTAAGGTTCCTCCCAAAGGAACATGCATGTGAT
ATATTTAAAACACCAATTAAAATACACAAGAGAATGGGGGAGCTATTGGCAACAAAACTTTGTG
GAGCACTGGAACTTCAAAACATTTTTTTTTTGAAGAAATGATTATATGTCGTACTTCAACAAAT
CTAGTTTGCCATAGTTCTATGTATCTTTAGAGAATAGTTGAGTGGAGAACCCATCAAACCTGAA
TGCCCGGTACAACAAAGTAAGGCTGCATGCATTAGTAACTCTTCCTTCAGCCATTAAACTGCTA
TATTAGAGACACTTTATAGCCATGACAAATTAGACGTCTTATGATAATTGATAAGCACAAAATT
ATAATGTGACGGATGCCTTTTCATACATAAGGGTACTTGCAGATTCAATTGTTAAACAGGAGTC
CATTTACCACATCCCAAATTTTAATTATCAACTGAAAAGCAGATCTCCAATATTCTAAGTTTCT
AATGCATATTAATCAGGGTTGAGAAGCAAAAAAAATCGTTTCGGTATCCTACAGAAATACGAGG
TGCTTAAAAAAGGGACAAGACAAACATCTTCTCTGTCCTTGTTCTGAATGCAAAAGGAGCACTT
GAATATAGGCATACACTATATGATGCTTACTGAACTGCTGCTCCAAAGCTTCATTTTTTTTATA
TATTATTCATGTTACATATGAAATGTTAAAATGACATGAGAGGTTTACAATCACCCTTAAATAT
GAAGACTGATTAAAACTTACCATGTATGACATCAAACAATTGACAGAATCATACAGTCTATTAA
CTTCCACTGCTTCGCCAACAATATCTGGAGAAATCTTCGATAGCAATAATGCCGCCTAATAATA
AAACAAAACGAGAACAGTTCAAACTATTACAATGTCAAGAATACCAGCAGACAATTGCTATGGA
ACAGACTAAACTTTACAGATAAGATCATAAGAGAATCTACAATGGTTCTTAATAACTATTTCTC
ATGCATACCAGAGAGTTTATATATGCTAGAAGAGTAGAAGAACAATATTTTCTCAAGCTTGAAA
GATAAAATTTACCTTAAGTCCTTCTGCAGTGCAATCTGATATAGGCCAACCATGATCAGCAGTA
GAAAAGGGCCATGCACCTTTAGATATGTGGCGGTACCACTGACTAAGATCTCCAGGGCAGTCAT
CGATAACCTTTCAGGATAAAAGCCACAGGTAAGTAATGAGATGGCTTGAAATGTTGATTAGTAT
AATCGTATAAGGGAACATGCATGAGGCATGCACCTGCGTTTTCTTTATGTAGCCATGTGCTAGT
TTAAGAGTAGGACCAAATTCTTCAATGAGGCCAGTAGCCACTATAGCTTGAACTGTGAAAGCTG
TGTCCCACAGCTGGCTTCCATTATAACCCTACAGCGGTCACAAAAAGAATCTATAGTTAAAGTA
AACAGAACACACTTGATGCAATGCTTCTCTAAAATTATGCTATGTTAAAAACTTCATTGGCAGA
AATTATGCCAAAACAATTTTCCAATGGCATCAATAGACAGTAAATCACACTTGTTCAATAGGTG
TCTTGTGCCAAAGTTACCAACTTTCTTGTTGGAAGTTAGAGTAAAGAAAAAAGGTGACCTGCAT
TTTCATGCCATCTTCTGCAATCCATAGGTAATCGTGGACTCTTGGAATGTGGAGTTTGAATGCC
TCTGAGTTTGGATCTTCAATCCAGCAAGCAAGCATATTTAATAC
Conservation Information
Conserved circRNAs NA
PMCS 0.110877271
Functional Information
Coding potential Y
Potential coding position 2132912-2129511(+)
2132925-2129315(+)
2132965-2129283(-)
Potential amino acid sequence MWSLNASEFGSSIQQASIFNTCWGNSPSSDCKLIKTFAARCKGIGSLSACPASIRASMAQPVFT
A*(+)
MPLSLDLQSSKQAYLILAGEIHHLPIVS*(+)
MLACWIEDPNSEAFKLHIPRVHDYLWIAEDGMKMQGYNGSQLWDTAFTVQAIVATGLIEEFGPT
LKLAHGYIKKTQVIDDCPGDLSQWYRHISKGAWPFSTADHGWPISDCTAEGLKAALLLSKISPD
IVGEAVEVNRLYDSVNCLMSYMNDNGGFATYELTRSYAWLELINPAETFGDIVIDYPYVECTSA
AIQALTAFKKLYPGHRKSEIDNCISKAASFIEGIQKSDGSWYGSWAVCFTYGTWFGVKGLVAAG
RTFKNSPAIRKACDFLLSKELPSGGWGESYLSSQDQVYTNLEGKRPHAVNTGWAMLALIDAGQA
ERDPIPLHRAAKVLINLQSEDGEFPQQVLNMLACWIEDPNSEAFKLHIPRVHDYLWIAEDGMKM
QGYNGSQLWDTAFTVQAIVATGLIEEFGPTLKLAHGYIKKTQVIDDCPGDLSQWYRHISKGAWP
FSTADHGWPISDCTAEGLKAALLLSKISPDIVGEAVEVNRLYDSVNCLMSYMNDNGGFATYELT
RSYAWLELINPAETFGDIVIDYPYVECTSAAIQALTAFKKLYPGHRKSEIDNCISKAASFIEGI
QKSDGSWYGSWAVCFTYGTWFGVKGLVAAGRTFKNSPAIRKACDFLLSKELPSGGWGESYLSSQ
DQVYTNLEGKRPHAVNTGWAMLALIDAGQAERDPIPLHRAAKVLINLQSEDGEFPQQVLNMLAC
WIEDPNSEAFKLHIPRVHDYLWIAEDGMKMQGYNGSQLWDTAFTVQAIVATGLIEEFGPTLKLA
HGYIKKTQVIDDCPGDLSQWYRHISKGAWPFSTADHGWPISDCTAEGLKAALLLSKISPDIVGE
AVEVNRLYDSVNCLMSYMNDNGGFATYELTRSYAWLELINPAETFGDIVIDYPYVECTSAAIQA
LTAFKKLYPGHRKSEIDNCISKAASFIEGIQKSDGSWYGSWAVCFTYGTWFGVKGLVAAGRTFK
NSPAIRKACDFLLSKELPSGGWGESYLSSQDQVYTNLEGKRPHAVNTGWAMLALIDAGQAERDP
IPLHRAAKVLINLQSEDGEFPQQVLNMLACWIEDPNSEAFKLHIPRVHDYLWIAEDGMKMQGYN
GSQLWDTAFTVQAIVATGLIEEFGPTLKLAHGYIKKTQVIDDCPGDLSQWYRHISKGAWPFSTA
DHGWPISDCTAEGLKAALLLSKISPDIVGEAVEVNRLYDSVNCLMSYMNDNGGFATYELTRSYA
WLELINPAETFGDIVIDYPYVECTSAAIQALTAFKKLYPGHRKSEIDNCISKAASFIEGIQKSD
GSWYGSWAVCFTYGTWFGVKGLVAAGRTFKNSPAIRKACDFLLSKELPSGGWGESYLSSQDQVY
TNLEGKRPHAVNTGWAMLALIDAGQAERDPIPLHRAAKVLINLQSEDGEFPQQ(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017