Detail information of BGIOSGA016764_circ_g.1


General Information
CircRNA Name BGIOSGA016764_circ_g.1
ID in PlantcircBase osi_circ_014574
Alias Chr04:26532065_26532243(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 24666337-24666515  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2, find_circ
Parent gene BGIOSGA016764
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   Yes-No
Splicing signals   GT-GA
Number of exons covered BGIOSGA016764-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CACCGGTTAAAATCTCATCATTTTCATTGGAAATGTCACTTGAAAAAAAATCTAGTTAATACTT
ATTGATCAAGCATGTTAAGTATTTTggtaagcacgctcatctcccttccaacaagtcctgacat
agtttattcacatgcaacgattcccatgagcttgacatcattgttgctgat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTAAGCACGCTCATCTCCCTTCCAACAAGTCCTGACATAGTTTATTCACATGCAACGATTCCC
ATGAGCTTGACATCATTGTTGCTGATCACCGGTTAAAATCTCATCATTTTCATTGGAAATGTCA
CTTGAAAAAAAATCTAGTTAATACTTATTGATCAAGCATGTTAAGTATTTT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021