Plant Circular RNA Database

Detail information of ENSRNA049495687_circ_g.39

			
						 General Information
					
						CircRNA Name
						ENSRNA049495687_circ_g.39
					
						ID in PlantcircBase
						ath_circ_002732
					
						Alias
						AT1G15405_C9, AT1G15405_C9
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr1: 5298017-5298163  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRI2
					
						Parent gene
						
							ENSRNA049495687						
					
						Parent gene annotation
						
							SRP_RNA
							
						Parent gene strand
						-
					
						Alternative splicing
						
							ENSRNA049495687_circ_g.1 ENSRNA049495687_circ_g.2 ENSRNA049495687_circ_g.3 ENSRNA049495687_circ_g.4 ENSRNA049495687_circ_g.5 ENSRNA049495687_circ_g.6 ENSRNA049495687_circ_g.7 ENSRNA049495687_circ_g.8 ENSRNA049495687_circ_g.9 ENSRNA049495687_circ_g.10 ENSRNA049495687_circ_g.11 ENSRNA049495687_circ_g.12 ENSRNA049495687_circ_g.13 ENSRNA049495687_circ_g.14 ENSRNA049495687_circ_g.15 ENSRNA049495687_circ_g.16 ENSRNA049495687_circ_g.17 ENSRNA049495687_circ_g.18 ENSRNA049495687_circ_g.19 ENSRNA049495687_circ_g.20 ENSRNA049495687_circ_g.21 ENSRNA049495687_circ_g.22 ENSRNA049495687_circ_g.23 ENSRNA049495687_circ_g.24 ENSRNA049495687_circ_g.25 ENSRNA049495687_circ_g.26 ENSRNA049495687_circ_g.27 ENSRNA049495687_circ_g.28 ENSRNA049495687_circ_g.29 ENSRNA049495687_circ_g.30 ENSRNA049495687_circ_g.31 ENSRNA049495687_circ_g.32 ENSRNA049495687_circ_g.33 ENSRNA049495687_circ_g.34 ENSRNA049495687_circ_g.35 ENSRNA049495687_circ_g.36 ENSRNA049495687_circ_g.37 ENSRNA049495687_circ_g.38 ENSRNA049495687_circ_g.40 ENSRNA049495687_circ_g.41 ENSRNA049495687_circ_g.42 ENSRNA049495687_circ_g.43 ENSRNA049495687_circ_g.44 						
					
						Support reads
						NA
					
						Tissues
						leaf
					
						Exon boundary  
						
							No-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT1G15405.1:1
AT1G05163.1:1
AT1G15405.1:1
AT1G05163.1:1
ENSRNA049495687-T1:1
AT1G15405.1:1

General Information
CircRNA Name	ENSRNA049495687_circ_g.39
ID in PlantcircBase	ath_circ_002732
Alias	AT1G15405_C9, AT1G15405_C9
Organism	Arabidpsis thaliana
Position	chr1: 5298017-5298163 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	CIRI2
Parent gene	ENSRNA049495687
Parent gene annotation	SRP_RNA
Parent gene strand	-
Alternative splicing	ENSRNA049495687_circ_g.1 ENSRNA049495687_circ_g.2 ENSRNA049495687_circ_g.3 ENSRNA049495687_circ_g.4 ENSRNA049495687_circ_g.5 ENSRNA049495687_circ_g.6 ENSRNA049495687_circ_g.7 ENSRNA049495687_circ_g.8 ENSRNA049495687_circ_g.9 ENSRNA049495687_circ_g.10 ENSRNA049495687_circ_g.11 ENSRNA049495687_circ_g.12 ENSRNA049495687_circ_g.13 ENSRNA049495687_circ_g.14 ENSRNA049495687_circ_g.15 ENSRNA049495687_circ_g.16 ENSRNA049495687_circ_g.17 ENSRNA049495687_circ_g.18 ENSRNA049495687_circ_g.19 ENSRNA049495687_circ_g.20 ENSRNA049495687_circ_g.21 ENSRNA049495687_circ_g.22 ENSRNA049495687_circ_g.23 ENSRNA049495687_circ_g.24 ENSRNA049495687_circ_g.25 ENSRNA049495687_circ_g.26 ENSRNA049495687_circ_g.27 ENSRNA049495687_circ_g.28 ENSRNA049495687_circ_g.29 ENSRNA049495687_circ_g.30 ENSRNA049495687_circ_g.31 ENSRNA049495687_circ_g.32 ENSRNA049495687_circ_g.33 ENSRNA049495687_circ_g.34 ENSRNA049495687_circ_g.35 ENSRNA049495687_circ_g.36 ENSRNA049495687_circ_g.37 ENSRNA049495687_circ_g.38 ENSRNA049495687_circ_g.40 ENSRNA049495687_circ_g.41 ENSRNA049495687_circ_g.42 ENSRNA049495687_circ_g.43 ENSRNA049495687_circ_g.44
Support reads	NA
Tissues	leaf
Exon boundary	No-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT1G15405.1:1 AT1G05163.1:1 AT1G15405.1:1 AT1G05163.1:1 ENSRNA049495687-T1:1 AT1G15405.1:1

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							CACAACAGATCCGACCCGTGGGCCGAGCCAGTGTTCCACCAACTTATTGTCCCCACACGGGTCA
CAAGCCCACaaccgcctgagccaagccttcgcttaacacacacggatcactctcagcttggact
gggcagcccggaacaatgc

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							NA						
					
						Genomic sequence
						
							AACCGCCTGAGCCAAGCCTTCGCTTAACACACACGGATCACTCTCAGCTTGGACTGGGCAGCCC
GGAACAATGCCACAACAGATCCGACCCGTGGGCCGAGCCAGTGTTCCACCAACTTATTGTCCCC
ACACGGGTCACAAGCCCAC

Sequences
Splice junction sequence	CACAACAGATCCGACCCGTGGGCCGAGCCAGTGTTCCACCAACTTATTGTCCCCACACGGGTCA CAAGCCCACaaccgcctgagccaagccttcgcttaacacacacggatcactctcagcttggact gggcagcccggaacaatgc
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	AACCGCCTGAGCCAAGCCTTCGCTTAACACACACGGATCACTCTCAGCTTGGACTGGGCAGCCC GGAACAATGCCACAACAGATCCGACCCGTGGGCCGAGCCAGTGTTCCACCAACTTATTGTCCCC ACACGGGTCACAAGCCCAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.499611111

Conservation Information
Conserved circRNAs	NA
PMCS	0.499611111

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						response to drought stress

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	response to drought stress

			
						 Other Information
					
						References
						Zhang et al., 2019

circRNA

Detail information of ENSRNA049495687_circ_g.39

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