Detail information of AT2G03070_circ_g.1


General Information
CircRNA Name AT2G03070_circ_g.1
ID in PlantcircBase ath_circ_012631
Alias NA
Organism Arabidpsis thaliana
Position chr2: 906247-906590  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder, circRNA_finder, CIRI-full
Parent gene AT2G03070
Parent gene annotation Mediator of RNA polymerase II transcription subunit 8
Parent gene strand +
Alternative splicing NA
Support reads 2
Tissues aerial, whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G03070.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTACTACCGGAGATGGAAACTGATGACAATGCCAAGAGAGAGCAGTTGCTTCAAGGTGTTCAG
AGTTTGCCTATACCAATGCAAATCGAAAGGCTTAAGgcaggatattctagggcagtattcgatg
gtaaatctcgagctttttaacattgtggaagaagtaaagagagtttcaaatgcgtttgttgtgc
ttcctaag
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 250
Transcript exons: 906247-906590
GCAGGATATTCTAGGGCAGTATTCGATGGTAAATCTCGAGCTTTTTAACATTGTGGAAGAAGTA
AAGAGAGTTTCAAATGCGTTTGTTGTGCTTCCTAAGAACGTCAATGCTATGAACGCTGCAATTT
TACCGGTTATGTTGTCTTCGAAATTACTACCGGAGATGGAAACTGATGACAATGCCAAGAGAGA
GCAGTTGCTTCAAGGTGTTCAGAGTTTGCCTATACCAATGCAAATCGAAAGGCTTAAG

Genomic sequence GCAGGATATTCTAGGGCAGTATTCGATGGTAAATCTCGAGCTTTTTAACATTGTGGAAGAAGTA
AAGAGAGTTTCAAATGCGTTTGTTGTGCTTCCTAAGAACGTCAATGCTATGAACGCTGCAAGTA
TGGTCTTTTTTTAGTTGTTTTAGTTGATGAGTTAAATGAATTGTGAATGTGATGAACTGGTTTA
GCTTAGCATTTATCAGTGAATCTGCAGTTTTACCGGTTATGTTGTCTTCGAAATTACTACCGGA
GATGGAAACTGATGACAATGCCAAGAGAGAGCAGTTGCTTCAAGGTGTTCAGAGTTTGCCTATA
CCAATGCAAATCGAAAGGCTTAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.144139293
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017