Detail information of AT1G01950_circ_g.9


General Information
CircRNA Name AT1G01950_circ_g.9
ID in PlantcircBase ath_circ_000163
Alias NA
Organism Arabidpsis thaliana
Position chr1: 328424-328555  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT1G01950
Parent gene annotation Kinesin-like protein
Parent gene strand +
Alternative splicing NA
Support reads 1
Tissues aerial, inflorescences, whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT1G01950.4:1
AT1G01950.1:1
AT1G01950.2:1
AT1G01950.3:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAACTTGAAGAAGAGGTCACCATATTACGAAGTCAACTTGTGCAGCTTACTTTTGAAGCTGATC
AGgaaggcgaagatgctggaataacaagactacaaaaactgctggaggatgaggctcttcagaa
aaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAAGGCGAAGATGCTGGAATAACAAGACTACAAAAACTGCTGGAGGATGAGGCTCTTCAGAAAA
AGAAACTTGAAGAAGAGGTCACCATATTACGAAGTCAACTTGTGCAGCTTACTTTTGAAGCTGA
TCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.326504742
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017