Detail information of Os05g0566500_circ_g.1


General Information
CircRNA Name Os05g0566500_circ_g.1
ID in PlantcircBase osa_circ_042183
Alias NA
Organism Oryza sativa
Position chr5: 28203081-28203250  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os05g0566500
Parent gene annotation Similar to Initiation factor 3d (Fragment). (Os05t0566500-01);Si
milar to Initiation factor 3d (Fragment). (Os05t0566500-02)
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os05t0566500-01:1
Os05t0566500-02:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGCCAGGGAGTGCGCGGAGTTGATATCATCCTTGTTTTCTGGGAGCTGCTCCTGCGCGGTCTC
GTTGACAGATAGCAGATCGAGgggttaggctcatcaaaggtaaccttctcaccatcgcgaagaa
gcacctgctgcgagaagttctggttgatgtaggtagcctcga
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 170
Transcript exons: 28203081-28203250
GGGTTAGGCTCATCAAAGGTAACCTTCTCACCATCGCGAAGAAGCACCTGCTGCGAGAAGTTCT
GGTTGATGTAGGTAGCCTCGACAGCCAGGGAGTGCGCGGAGTTGATATCATCCTTGTTTTCTGG
GAGCTGCTCCTGCGCGGTCTCGTTGACAGATAGCAGATCGAG

Genomic sequence GGGTTAGGCTCATCAAAGGTAACCTTCTCACCATCGCGAAGAAGCACCTGCTGCGAGAAGTTCT
GGTTGATGTAGGTAGCCTCGACAGCCAGGGAGTGCGCGGAGTTGATATCATCCTTGTTTTCTGG
GAGCTGCTCCTGCGCGGTCTCGTTGACAGATAGCAGATCGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.305883333
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study