Detail information of Os11g0621300_circ_g.2


General Information
CircRNA Name Os11g0621300_circ_g.2
ID in PlantcircBase osa_circ_009826
Alias NA
Organism Oryza sativa
Position chr11: 24220218-24222794  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os11g0621300
Parent gene annotation Protein of unknown function DUF1399 family protein. (Os11t062130
0-00)
Parent gene strand -
Alternative splicing NA
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os11t0621300-00:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTCAGACTGGTGCTTGGATTCTGCTCTAATCGAAGACTGAACATTGCTATTGTCGAGTATTCT
GCCATACAATCTCTTGCAGTCCTTTAAGTATTGTACcattatcagctcagatttggtgtcaagc
aatgcaactgctttgccatatggatgttcagcagagaacttcacagcagtaatagctgaagcat
tctcctct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATTATCAGCTCAGATTTGGTGTCAAGCAATGCAACTGCTTTGCCATATGGATGTTCAGCAGAG
AACTTCACAGCAGTAATAGCTGAAGCATTCTCCTCTGCGTGATTGTTGCAGCACTTCCGTTGAA
ATTCTAGCCTCTTTCCCTGGTAGAGTTTGATCTGGTTTGTTCAAAGAAGACTTAGATCATTCTT
TTCGAGACAAGGACACACACACACATATATAGTAGATTTATGTGTGCAGGTAATGTATTAGCAT
CACTTACCGTTTTGTTGTCACATTTGAGCTCAAGTATAGAGCCATCCTTGCTTGGTTTCATGTC
ATTAGTGATGCATAAGTTAGAGTTGCTCAGTGACCACTTGTTGTCCACGAACTCTGCTAGCTTA
AATGGTTTCTTTGATGACTTTGTTACTCCGACCAACTCCCGAGCGACAACCATGCCGTTCTTTG
CCTTCTGATCCCTGAGATGAAGGCGAGTCAGTACTCATTAGCAAGAAGGATTTGATACAAAGAG
TACCATTAATCAATCAAAAGATCCTAAAAAGGTAAACTAAAAACTAGTGCTTAAGTGCTTCAAC
AATTTTAGATTTGATTTATGAAATGGTTAACTGTATCCACATAAGTTGAAGTGTTGAACATCAG
CTCCAATCGCAAACAGAACATTTTGTAAATGTATTCAATGGCATTTGAAATGAATACACATAAA
TACCATAAATGCTTTCCATGCTGTTACTAGTGAGAAAGTGTTAGTCCATTTCTTTTATTTTGAA
TGAAAGAATTAATCTGAAGAAGTATCAAGGAGGGCAGAAAATCACCTAATTTGAAGACGGATAA
GTTCAGTATTGCAATCATACACAAAGTGAGTCCAGCAGCTCATCTTTTGATCCTTGATGGAATT
CGGTGACAGAAAACTCTTAAGAGAGAAAGGTTCTGTCCTGATCATGCTAAGAACCTGCTGAGCC
TTCACTGGGACAGTGGAAGAGGCAGCAACTCGAAGGCTGACGATAGGTGAACTGGCATGCCCAT
CATGAGGTTTCAATTCAAACCACCTCTCAAAGGAGAGCTTGGAATCAGACCATGTAAACTCTTG
AAGAGGGATAGAAATCTTCCCAATCTTTTTGGGTTTCTTCGATGATGATTCCCGATCAACCAGT
ACTGTTAGAATGAGTTCACCAGTAGGCTCACATTGGATACTGGCTCCAATCGACTTCCCTGTTT
TTGTAGAGATATCCAGCCTGCCACCATCACTGATGAACATGTCTGGTTGATTCTTTGTGAACCA
TATGTACACATTTTCCTTTGGAATTGCAGGTGGCAAGTTCTTGATGTCCACAATTTGCAAGAAT
AACTGCAGAAGACCAAAAGATTTTAAGTCAATAAATAATTTCAGTAGAAGAATCTTTGTAAAAC
AACTGCTGAATTCAGGTTCTGGATATGATGTTCCACATTAGTTATACTTTCAGAAACAACAGTT
GTCAGTATAGCATTCTACACTTCAAACCATATTGTCAAACAGCTCCTTTATATAGGCCCTTAAC
ACCATCCCCATTACCATACAGGAGTCTGTAAAAAGGAAAAACCACCATACTTCTGTGGCTTTGA
TTCAAGGATAATAATGTGTTGTGAGAGTATCATACCTCTATAACTGTTGTTTCAAGAATGGTAA
TTTGCGACTCAGCTTTGCCAACACTAAATTCACCATCCACCTCACTAATAAACATCTGAGGATT
GGATGTCACAGGAGACGGCAAGTTGCCACGGTACATAGCACCAGCCTTCCAGTATCTTGCACCA
AAGGCATTCTCAAACTGTTTGGTAGTCCCTGAAAATCCAGTATCGAGCTTCTTTCCTTCTGATC
GATCGTCATCGGTGTCATCATGCTCCAGAACTCGTCCAATGAGCTTCAGCATATCATGGCAGTA
GGTAGCAGGATGCAGTTGGTGAGTGTGCCAGATGACATCCACATCATAGGTTGGCACGCGAAAG
AGCTTCATTTTGTTCTCCTGATTCGTCTTGATCAGGTACAAGAATCCTTTGTACCGAGCTAAAG
CTTCTTCCAGAAATCGCTGATCATGCATAGTTGGTGTGTCAACCTGATATAAACAAGGTAAATT
TCTGAGTACATCTCACATTTGCTTATGTATGGATCATCATTGACAAAATTTAGATAAATTAACA
TTTAACACCTGTACTACTTTTCAGTTCATAATAATGATATGATGGTTCAACTGAATGTTGAAGA
ATGATGTTTTGGATTTTATGATTCAGTCAGTAGTACTGTACTACTTTTATTATATGACAGTGAA
GAATATTTCTGTAACTAGTACCTGGTAGAAGAAAGAAGACTGTCTCTTAACAGCTGCGACCAAA
TCATAAGAAATGTCCTCTGCAGCTCCAGCATTTGCATAAATTGAGTTGTCAGAAGAGCTTGTGT
ACTCCAGCTCAAAGGGCTCCTTAGGATATTGCTCAGCCCAAACCTTCTCAGACTGGTGCTTGGA
TTCTGCTCTAATCGAAGACTGAACATTGCTATTGTCGAGTATTCTGCCATACAATCTCTTGCAG
TCCTTTAAGTATTGTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.129968701
Functional Information
Coding potential Y
Potential coding position 24222295-24220220(-)
Potential amino acid sequence MHDQRFLEEALARYKGFLYLIKTNQENKMKLFRVPTYDVDVIWHTHQLHPATYCHDMLKLIGRV
LEHDDTDDDRSEGKKLDTGFSGTTKQFENAFGARYWKAGAMYRGNLPSPVTSNPQMFISEVDGE
FSVGKAESQITILETTVIELFLQIVDIKNLPPAIPKENVYIWFTKNQPDMFISDGGRLDISTKT
GKSIGASIQCEPTGELILTVLVDRESSSKKPKKIGKISIPLQEFTWSDSKLSFERWFELKPHDG
HASSPIVSLRVAASSTVPVKAQQVLSMIRTEPFSLKSFLSPNSIKDQKMSCWTHFVYDCNTELI
RLQIRDQKAKNGMVVARELVGVTKSSKKPFKLAEFVDNKWSLSNSNLCITNDMKPSKDGSILEL
KCDNKTIKLYQGKRLEFQRKCCNNHAEENASAITAVKFSAEHPYGKAVALLDTKSELIMVQYLK
DCKRLYGRILDNSNVQSSIRAESKHQSEKVWAEQYPKEPFELEYTSSSDNSIYANAGAAEDISY
DLVAAVKRQSSFFYQVDTPTMHDQRFLEEALARYKGFLYLIKTNQENKMKLFRVPTYDVDVIWH
THQLHPATYCHDMLKLIGRVLEHDDTDDDRSEGKKLDTGFSGTTKQFENAFGARYWKAGAMYRG
NLPSPVTSNPQMFISEVDGEFSVGKAESQITILETTVIELFLQIVDIKNLPPAIPKENVYIWFT
KNQPDMFISDGGRLDISTKTGKSIGASIQCEPTGELILTVLVDRESSSKKPKKIGKISIPLQEF
TWSDSKLSFERWFELKPHDGHASSPIVSLRVAASSTVPVKAQQVLSMIRTEPFSLKSFLSPNSI
KDQKMSCWTHFVYDCNTELIRLQIRDQKAKNGMVVARELVGVTKSSKKPFKLAEFVDNKWSLSN
SNLCITNDMKPSKDGSILELKCDNKTIKLYQGKRLEFQRKCCNNHAEENASAITAVKFSAEHPY
GKAVALLDTKSELIMVQYLKDCKRLYGRILDNSNVQSSIRAESKHQSEKVWAEQYPKEPFELEY
TSSSDNSIYANAGAAEDISYDLVAAVKRQSSFFYQVDTPTMHDQRFLEEALARYKGFLYLIKTN
QENKMKLFRVPTYDVDVIWHTHQLHPATYCHDMLKLIGRVLEHDDTDDDRSEGKKLDTGFSGTT
KQFENAFGARYWKAGAMYRGNLPSPVTSNPQMFISEVDGEFSVGKAESQITILETTVIELFLQI
VDIKNLPPAIPKENVYIWFTKNQPDMFISDGGRLDISTKTGKSIGASIQCEPTGELILTVLVDR
ESSSKKPKKIGKISIPLQEFTWSDSKLSFERWFELKPHDGHASSPIVSLRVAASSTVPVKAQQV
LSMIRTEPFSLKSFLSPNSIKDQKMSCWTHFVYDCNTELIRLQIRDQKAKNGMVVARELVGVTK
SSKKPFKLAEFVDNKWSLSNSNLCITNDMKPSKDGSILELKCDNKTIKLYQGKRLEFQRKCCNN
HAEENASAITAVKFSAEHPYGKAVALLDTKSELIMVQYLKDCKRLYGRILDNSNVQSSIRAESK
HQSEKVWAEQYPKEPFELEYTSSSDNSIYANAGAAEDISYDLVAAVKRQSSFFYQVDTPTMHDQ
RFLEEALARYKGFLYLIKTNQENKMKLFRVPTYDVDVIWHTHQLHPATYCHDMLKLIGRVLEHD
DTDDDRSEGKKLDTGFSGTTKQFENAFGARYWKAGAMYRGNLPSPVTSNPQMFISEVDGEFSVG
KAESQITILETTVIELFLQIVDIKNLPPAIPKENVYIWFTKNQPDMFISDGGRLDISTKTGKSI
GASIQCEPTGELILTVLVDRESSSKKPKKIGKISIPLQEFTWSDSKLSFERWFELKPHDGHASS
PIVSLRVAASSTVPVKAQQVLSMIRTEPFSLKSFLSPNSIKDQKMSCWTHFVYDCNTELIRLQI
RDQKAKNGMVVARELVGVTKSSKKPFKLAEFVDNKWSLSNSNLCITNDMKPSKDGSILELKCDN
KTIKLYQGKRLEFQRKCCNNHAEENASAITAVKFSAEHPYGKAVALLDTKSELIM(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017