Detail information of AT2G14530_circ_g.2


General Information
CircRNA Name AT2G14530_circ_g.2
ID in PlantcircBase ath_circ_013332
Alias 2:6189084-6189593
Organism Arabidpsis thaliana
Position chr2: 6189084-6189593  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G14530
Parent gene annotation Protein trichome birefringence-like 13
Parent gene strand +
Alternative splicing AT2G14530_circ_g.1
Support reads 1/1
Tissues seedling;root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G14530.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATCATATTCTTCCGGACACAATCACCTAGGCACTTTGAAGGAGGTGACTGGGACCAAGGTGGT
ACTTGTCAACGACTGCAACCTTTGTTACCTGGAAAAgtggtgggcgccatcaaaatttgaccct
gtaaaatctcctatgcttttctttgaaggcggtcggccaatacttccacctatacctcctgcta
ctggccta
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 256
Transcript exons: 6189084-6189204,6189459-6189593
GTGGTGGGCGCCATCAAAATTTGACCCTGTAAAATCTCCTATGCTTTTCTTTGAAGGCGGTCGG
CCAATACTTCCACCTATACCTCCTGCTACTGGCCTAGACCGGGTTCTAAACAATATGGTAAATT
TTGTGGAGAAAACAAAGCGACCTGGAGGGATCATATTCTTCCGGACACAATCACCTAGGCACTT
TGAAGGAGGTGACTGGGACCAAGGTGGTACTTGTCAACGACTGCAACCTTTGTTACCTGGAAAA

Genomic sequence GTGGTGGGCGCCATCAAAATTTGACCCTGTAAAATCTCCTATGCTTTTCTTTGAAGGCGGTCGG
CCAATACTTCCACCTATACCTCCTGCTACTGGCCTAGACCGGGTTCTAAACAATATGGTATGCG
GTCTGGATTTCTCTGTTTTCCTGTGTTACTATAACGCAACTTGAGATATTTGATACTGCCATTG
ACTACTAGATAATCTGTTTTCAAAATGAACATGGGCTATGACATTTTTGGGCAAGTATTGCATG
ACTTTACAGCGTTTTGTATTGAAGAATCAGTTTTTGAGCAAACACCAAACTGTGCGATATGATA
AAGTAATGGTAGTGAAATATTCTGATCCTTATACGACGTTCCGCCATTGTAACAGGTAAATTTT
GTGGAGAAAACAAAGCGACCTGGAGGGATCATATTCTTCCGGACACAATCACCTAGGCACTTTG
AAGGAGGTGACTGGGACCAAGGTGGTACTTGTCAACGACTGCAACCTTTGTTACCTGGAAAA
Conservation Information
Conserved circRNAs NA
PMCS 0.267297007
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020