Detail information of AT1G80000_circ_g.1


General Information
CircRNA Name AT1G80000_circ_g.1
ID in PlantcircBase ath_circ_011196
Alias Ath_circ_FC1097
Organism Arabidpsis thaliana
Position chr1: 30093973-30095534  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method KNIFE, PcircRNA_finder
Parent gene AT1G80000
Parent gene annotation Protein MLN51 homolog
Parent gene strand +
Alternative splicing NA
Support reads 1
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT1G80000.2:4
AT1G80000.1:4
AT1G80000.3:4
AT1G80000.4:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCAATTCGGTGGTCAGCATGGTGGGGTTCCAACTTTTGGAATGGCTCTTCCAGGTTATTTCCA
ACCAGAACATGGTACCGGAAATCCTGAGATGACATGgcgaatgcgtggtggtaggaggctctgg
caatccagagatgaaagaaagtggggacatgacaaattcgaggaaatgaatacacagaaacagc
aatatgat
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1089
Transcript exons: 30093973-30094072,30094238-30094443,30094529-30095208,30
095432-30095534
GCGAATGCGTGGTGGTAGGAGGCTCTGGCAATCCAGAGATGAAAGAAAGTGGGGACATGACAAA
TTCGAGGAAATGAATACACAGAAACAGCAATATGATAGGAGGACTTCGAGAGGCCGAGGCAGAG
GTCGTGGTCAGGGTAGGGGTCAGGACCGTGGACAGTCTCGGGGGAACAATTCTAAAGAATTTAC
TGGCAATGGACACCAAAATCAGTTTCCGAAGGCTGTCACGAGAGGGAGGGGGGCCAGAAGATAT
GAGGTTGCATTGAGAAATGGGAATCAAGCACCTTCTGTGCAAACCAAACAGTCCCAAAATTCGT
CTGTGGAAGTGTCACACGTTGATTTAGGGCGTCCACCAACAGAAACAGCTACCTTAGAGACTGA
AGCCATCCAAGCCAAAAAGAATGTATTTGCTTCAAGTTTAAATTCAGCTTCTCCTCCATTTTAT
CCTTCAAGATCCAACAATAACTTGGCACAAAAGGATGTACAAGCTGGCATGGGTAGGCTGCACA
TTAATGAAAACCCTAATCCGACTGGAAAGAAGTTTGGGAATACAAAATCCAGCTCCTTGTGGGG
ACGCACTGCTCAGACTACAAGTCATGGTAGAGGTGTACCTCCTCATGGGCAAGTGCTTTACCAG
CAATCTCCTAATCAAGGTGACAAAGTTTCTTCGCCGATGCAAATCCGTGGAATGCCTAAAGGCA
CTGACCAGAGCTGTACTCAACTTCCTGGTCAGGTTTTTAATCAACATTCGGCTGTTATCAGTTT
GCTGCCTTCTTCTCCTCCAAAAACCGGATCATCAGAAAATCCGTATCTTTCTGGTGAAATAGAG
TCAGCCGTAGAAACAGGTGCTTTGGTTGCCAAGGGAAAAGGGTCTCTCCAACCTAGTGGAAGGG
GATCTTTTATGTATGGAGGGACACAGTTTATGGGCCCTGCCGGGATGGCAGCTGGTCACGGCAA
TCCAAATTTCCCTGCTTTTCTACCTGTTATGCAATTCGGTGGTCAGCATGGTGGGGTTCCAACT
TTTGGAATGGCTCTTCCAGGTTATTTCCAACCAGAACATGGTACCGGAAATCCTGAGATGACAT
G

Genomic sequence GCGAATGCGTGGTGGTAGGAGGCTCTGGCAATCCAGAGATGAAAGAAAGTGGGGACATGACAAA
TTCGAGGAAATGAATACACAGAAACAGCAATATGATGTACTTTTCTCTGATCATCTCTCTTTCT
CTTTCTCTCCTTTTCATAAATATATTTGTATTCATCGACTTGTTTCCTCTTGCTGTGTTTATAC
ATTTGCCACCTCTTTTTTCTTTTTCCTTTTTTTTTTCCTTTTGAAAGCTGATTAATTAAACTTG
TGAACATAGAGGAGGACTTCGAGAGGCCGAGGCAGAGGTCGTGGTCAGGGTAGGGGTCAGGACC
GTGGACAGTCTCGGGGGAACAATTCTAAAGAATTTACTGGCAATGGACACCAAAATCAGTTTCC
GAAGGCTGTCACGAGAGGGAGGGGGGCCAGAAGATATGAGGTTGCATTGAGAAATGGGAATCAA
GCACCTTCTGTGCAAACCAAACAGTGAGTCCTTAATTTTGTTTCCTCTCTAGTCAACACATGAA
GGCTCTAGGTCTCTAATTGTTGTGTCTTTTTACGGAATCTTTAGGTCCCAAAATTCGTCTGTGG
AAGTGTCACACGTTGATTTAGGGCGTCCACCAACAGAAACAGCTACCTTAGAGACTGAAGCCAT
CCAAGCCAAAAAGAATGTATTTGCTTCAAGTTTAAATTCAGCTTCTCCTCCATTTTATCCTTCA
AGATCCAACAATAACTTGGCACAAAAGGATGTACAAGCTGGCATGGGTAGGCTGCACATTAATG
AAAACCCTAATCCGACTGGAAAGAAGTTTGGGAATACAAAATCCAGCTCCTTGTGGGGACGCAC
TGCTCAGACTACAAGTCATGGTAGAGGTGTACCTCCTCATGGGCAAGTGCTTTACCAGCAATCT
CCTAATCAAGGTGACAAAGTTTCTTCGCCGATGCAAATCCGTGGAATGCCTAAAGGCACTGACC
AGAGCTGTACTCAACTTCCTGGTCAGGTTTTTAATCAACATTCGGCTGTTATCAGTTTGCTGCC
TTCTTCTCCTCCAAAAACCGGATCATCAGAAAATCCGTATCTTTCTGGTGAAATAGAGTCAGCC
GTAGAAACAGGTGCTTTGGTTGCCAAGGGAAAAGGGTCTCTCCAACCTAGTGGAAGGGGATCTT
TTATGTATGGAGGGACACAGTTTATGGGCCCTGCCGGGATGGCAGCTGGTCACGGCAATCCAAA
TTTCCCTGCTTTTCTACCTGGTAAGTTGTTCTTGAATGTCATTGTTCATCCTACATTGTAATGG
TTGAAAGACATCTTTCAGAATCAATCTATGCATGCTAGTGAAATTGAGAGCTATTGATGCTGAG
CCGCTTGGCCTGGTTGCCCATGTCTAGGGCCGCTTGAGAACGGCACCTTTTTGTACAGGTGCTA
ATATGCACGCCTGACTAGTTTAAACTTGTTTGTTTTCATTTTCATGTTCAGTTATGCAATTCGG
TGGTCAGCATGGTGGGGTTCCAACTTTTGGAATGGCTCTTCCAGGTTATTTCCAACCAGAACAT
GGTACCGGAAATCCTGAGATGACATG
Conservation Information
Conserved circRNAs NA
PMCS 0.27203873
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017;Chen et al., 2017a