Detail information of Zm00001d001663_circ_igg.1


General Information
CircRNA Name Zm00001d001663_circ_igg.1
ID in PlantcircBase zma_circ_008689
Alias zma_circ_0001897
Organism Zea mays
Position chr5: 153595798-153600381  JBrowse»
Reference genome AGPv4.38
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues leaf, root
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTCCATGGTCCGACGACCTAAAGGGAGCCACGACGAGCAATCCCCGGTTCGTACGGCTCCCTT
CACACCCAGCGATAGCACAAACCGCAAAAGCGCGACccggagaagctccatgtccaccgaccgg
agtggcagcgctggcgtaccagagttgtctccacggcggctctcattttcaccttatttctctg
cttgacac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCGGAGAAGCTCCATGTCCACCGACCGGAGTGGCAGCGCTGGCGTACCAGAGTTGTCTCCACGG
CGGCTCTCATTTTCACCTTATTTCTCTGCTTGACACCATGGCTCACCGCGCAAGGAACCGTGAT
GGAGTTGGCCAAGGGCGGCCCCAGATTTATAGTGGCAAGGGCGGAGACCGTGCGGTGGCATTCA
ACCAGCCAAAGCCGAATTCGTTGCGGTTTGTTGCAGCGCCCAACGGATTTGAGGTAGGAGACGG
ACCCGACAACTGGGGCCCACCTGCCAGTGAGAGCGACGGGTGCGGGCGCTGTGGCCACGCTGCG
TGGGTGAAGGCCTGGTCAGTGGGGCCCGCCTAGAAGCGACCGACCAGGTGGGAGTACTGAGCCG
CACGGTGAGAAAATGAGGATGGGCCGAATCTAACCTGGTGGCTCAGTATAGGTAATTTCCCTTT
TTCTTTTTCTTTCTATTCTTTTCATTTCTATTTTTCCAAATTCAAGGATTCAAATAAATTTAAG
TTTCTGGTTTGAACTTCAAATTCCCAAATATCAAACACAACCCTACTGAGAATATAACTCCTAC
TATTTGCATTAATATTATTTTTCTTTCTATAGTGTATATTCTTTTCCTTCCCTTCTCTTTTCTT
TTCTCCTTCCATTTTCAAATTCAAATTTTCAAACTTAAACTTGTCTCACAAATTTGAATACAAA
TGCAAAAATACAAGAACCCAGCATGGAATGCACATTTCTGTATTTATTTATTTGTTATTTGACC
AATATAATCCCATTAATTGAATATGCACAAAGAAAAGAAAACCAAATAATCTCCAAAGGTTCCA
TAGTCCCAAAACACCCACTTATTTATTTATTTATTTTATTATTTTTTCTTATACAAATTTTGGG
CTTTACAAATCCTACCCCCCTTAAATAATCTCGACCTCGAGATTAGTAAGAAAAGGGATATACA
AAGATTGATTTGTAATTGAGATTCTAGTTTCTAATTGGTTCAAAAATTAAGAGTTGTTTAAGTC
ATTAATACTAATTAGCAGGTGATTAGAAAAGCATGGGTATCTTTTATGTTTAGCCACACAGTTA
GGCAAGATTAGAGATGGTTAGAGTAAGGATAGGTTGAAGTAAGAAAGCATATGGCAAGGAAAGA
CTTCATCTCGGATAATGGATCTTGATTCATCTGAAGTTCTGATTCTACTCACATCCTTCCTTGT
CGAGGTTGACCTTCTTCTTTCCTTTAGTCTTGGTGTGATCATCCGAGTTAGGGACATATTGTTA
AGATATATGTGGGTAGGATGGATTACATGGTGTATGTAGGTTAGAATCTCTATTTTGTTGTTAG
GTTAAAACAGAGGGGTTATACAAAGTATTAGGGTCTTATAGGTTAGGTTGGTAGGTTAGAATTA
TTGCTTTGAAATAGATAGATTAGGCAACCTATCAAGAATGTGTAGGTTGTTCGTAATGGCCAAG
TTGGTCTAGGGCACCAATTTGGGTTTAAAACATGTGTTATAGGACTAGGGTCTATTTTATTTCA
CCACTATTAACTGGTTAAGTGACTGACCTTAGATTATGTCGTATTTAGAATAGATGGGATCCAG
ATTAGTTTGGTATGACTAGACATGATCTAATTGATTTGGGTTAGATGATGGTTTTTACACTAGG
ATGAGGTAAACAAAGTGGTTAGGATAAGATGGAAGTACAAGATAGAATCTTTTTAAGATAAGAT
GAATCTCATTAGGATAGGATAGATCTATTAAGATAGAATATTTTTCTTGTTTGTTTTATCTATC
TCTTTTTAATGTTGAATAATTTAAGTTGATATATATATATATATATTGATGCAATTGTGGACAT
TACTATACAACTCATCACACTCAATCAAAGAACCAAATCAGACAAGTATCATAAGGACAAGCAT
TCAAGCACATACATACTTACAAAAATAGTTTTCTTTTTGTTCCTAAGATTAGGTACCCTATTCC
TAAATGTCACTATAGGTACATGATTTCAAAGTGTGAAACCCACTTTTGTCTTTAGAAGAGAAAA
TGTAAGAGTAATCAGAGTAAAGCAGCAATAGATGAGAAAAGACTAAGAAAAATTTAGAAGGAAT
CAGAGTAGCAAAGGTAAGTAGGTAAGGTTATCCAGTTCTATCTAGGTTTCGTCGTACAGTCAAC
ATTGCTCTGATACCACTTCTGTCACACCCGGATTTAGGGGTCCAAACCCGGACACGACTCACAT
GTGTGCTAGGATCAAGTCTCACACATATGATGACTCATGGTACAGAACGAATGTCACATCTTTA
CTATATAATGGAGTTCTGTACAAAATAGTTAAATAAATACATCATACGAAGACGACGATCCAGC
AACCTTAGTTGACTGGGATACGACGACCTAGAGCTCTCACGAACTCATCACGATATTCTTCATG
CTCCTCATCATGCGGTACCTGTTCTTGACCTAGGGGGATGTGAGTACAGCAAGGGTGAGCTCAC
ATACGTTCATCGCTCAACAAGTTATGGGGAATAATGTGCATGAGTTCACTTACAGTGAGGCTCA
TGTGAAGTGTAAGGCTTACCAAAGGAGATGGTTAAAGCTGAGCATTGCTTTTAAAGTTGGTCAA
AATTTTATTAGCAATTACTAAGTATAAGTAGATACCAACCCAATTAAAATAAGAGATCACAATT
GATAATAACACCTGCGATGCAATGCATATGACATATTAAGTTTAGTTCCATATATTAATCATGC
GAGAGTCCTAAGTCGCTCTTGACTGTGAGCACGGCTGATATACCAGTTTTACACTCTGCAGAGG
TTGTGCCCTTTACCCACAAGCCGCATTACCCATTTGCCACAGGGTTGTACATACCCCATACACC
TCTACCATTGAAGCGAGGTAGGGTAGCACTAGGAGGCCTTTCCAAATTTCCACTAGTTTGAGAA
TACCCACTACGGGTTCAGAAAGAACGAAGCATAGGAATCCCTCATCTGAACTGCCATCGCAGTA
GTTCGACCCGAGAACCTCCCTATACTCTGCAGCGACGCCTCCCTGCTTGCCCCTTTTGAGTAAG
GTATACTCTCCCTAGCTTTCCTAATTACTTGGCCAAGGGCGTCCCATTCCACCCTTGTGGTAGC
ACTGTTATCTCAAGTTAAGCTCCATGTTCTAATTAACACAATGATCTTGTCAGGAACAATAAGT
AAAACAACAACATAATTGGAACATGATCATAGTATAACATTAATTTCCTAAAACCAGGTAGAGC
AATAGCAAATCTACCTAATAATTCATTTGTTTGCAAGGTGTGGGGTAAACAATGCTAGGGAAAC
CTATAAGGTCCCATCAAATTAACCTGAGCATGTCACAGTGATTACCAGAGAACATTATTAGGTA
AAGAGGAGTTAAGGGCACAACGTGCCTGTGACTCGAGATTCCCAGGTACCAACTTGGTCTTCAA
GTGACTCGTAACCTCGCTGCTACTTGTAGCAATACATAAAATAGACAAGAAGTACTTAAAAATA
ACAGTACACCAAACATGAAAACAAACAATGCAAGAATATTCTACGCACTGCTACAAGGTCGTGG
GTTCAAGAATTACTAAATTCGGATTTACGGTTATAAAGTTATGATTTTCTGAAGGTTTAAGTGT
CTACTGTAAAACAAATGAGGTACATGATTTTAACCATGGGTTTCATGATAATACAAGGTACTAG
ATGATAAACAATATTAATACGAGATTAATGCTACTGGAATGGATCAAAAAGGAGTTAAATTCAT
AGAGTTATAAATTTCCTAAGATTTTATATTTATTTTTACACTTAAAACTATTTCCTAGATTTAT
TTTAAGTTCTACGGACTGTGCCCACAATTTAATAGGAGTTCAAGGTCTCCTGCGTGAATAACAG
GACCTAGCAGTAAAGATCTTTACCTTAGGTAGGACTGCGGGTTCATTAATAGAAATTAAACTAG
GAGGTCTCTCACGTAAAACTGCCTGACCGAAGGGGTATCATGGAGCCTGGACCGTCCGATCCAA
TCCGAACGATCCAGATTAGATCCACACCCCGTTGAACCGGTATGCGCCATCAGCCGCTGGATCG
AGATCCAATGGCCCGGATTTTATGAAACCCAATCTAACCACAATCGCCCGATTCGAGATCTATG
GCCCTAGAGCCCATCACGTCTATCTCTACTCTCAGCCACCCGGGTCAAGATCAATGGATCAGAT
TTAACAAAACGAAGGGTATGGCTTCGTCTAATCTCTATCGTCCATACCAAGACCGACGGTAGGA
AGCCTCTCTTCCTCCCCCAACCGGCACTGGCGGCGCCGCCAAGCCCCCTGGGTGGCGCTACATT
GGAGCACGACACACCCATCACCCCGGTGCACAAGTCTTAGTGAGGTTAAGTAATAAACAGAGCA
GGGGCGATGGAGAGCTGAATGAGTTGGGTCTTACCTAGGATGGCAGCGGCCATGGCGCTGACCA
CGAAGGTCCATGGTCCGACGACCTAAAGGGAGCCACGACGAGCAATCCCCGGTTCGTACGGCTC
CCTTCACACCCAGCGATAGCACAAACCGCAAAAGCGCGAC
Conservation Information
Conserved circRNAs NA
PMCS 0.233712554
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b