Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Zm00001d025125_circ_g.1 |
ID in PlantcircBase | zma_circ_010278 |
Alias | Zm10circ00036, ZmciR414 |
Organism | Zea mays |
Position | chr10: 105486067-105486581 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d025125 |
Parent gene annotation |
P-loop containing nucleoside triphosphate hydrolases superfamily protein |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d025125_T001:3 Zm00001d025125_T005:3 Zm00001d025125_T003:3 Zm00001d025125_T002:3 Zm00001d025125_T004:3 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.279218544 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
105486320-105486578(+) 105486073-105486517(-) |
Potential amino acid sequence |
MTTVFPLFQQYIEPHLVHAHLKIQNDFDPVLSPESSLFVLKSKKQVIFEGVYTLHPAIRKFLDL WIAVVGGVHSHLIARIQRDKNRAGFSISQTEIMTTVFPLFQQYIEPHLVHAHLKIQNDFDPVLS PESSLFVLKSKKQVIFEGVYTLHPAIRKFLDLWIAVVGGVHSHLIARIQRDKNRAGFSISQTEI MTTVFPLFQQYIEPHLVHAHLKIQNDFDPVLSPESSLFVLKSKKQVIFEGVYTLHPAIRKFLDL WIAVVGGVHSHLIARIQRDKNRAGFSISQTEIMTTVFPLFQQYIEPHLVHAHLKIQNDFDPVLS PESSLFVLKSKKQ(+) MTCFLLFNTKSELSGESTGSKSF*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
---|---|
References | Han et al., 2020;Zhang et al., 2019 |