Detail information of BGIOSGA013275_circ_ag.1


General Information
CircRNA Name BGIOSGA013275_circ_ag.1
ID in PlantcircBase osi_circ_013393
Alias Chr10:3341047_3345454(MH63RS2), Chr10:3410736_3415145(ZS97RS2), Chr10:3341047_3345454(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr3: 30167885-30172294  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method CIRI2, CIRI2, CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA013276_circ_igg.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   TA-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCGCCTCTGCGGACGGCGAGGCGGCGGCGATCGTCGTCGGCCAGGCCAAGTGCGGCGAGTGCTC
CAGGAAGAACATGAAGGCGCAGGATGCTTTTAAGGGgtctccaggtggcgatcaagtgcaagaa
cagcgacggcgagtacgagagcaaggccgttggcgacctcgacggcgatggcgccttcagcgtg
cccctcgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTCTCCAGGTGGCGATCAAGTGCAAGAACAGCGACGGCGAGTACGAGAGCAAGGCCGTTGGCGA
CCTCGACGGCGATGGCGCCTTCAGCGTGCCCCTCGCCGCCGACGACCTCCACGGCGCCGCCGAC
TGCTTCGCGCAGCTGCACAGCGCGGCGAGCAGCACGCCGTGCCCCGGGCAGGAGCCGTCCAAGA
TCGTGCCGCTGTCATCAACAACGGACAACAAGGCTAGCACCTCCGTCGCCGTCGCCGGCAAGAG
GATGCACTCTTCCACGTCGCCGGCGGAGTGCACGTCGGCGTTCCTGTACGACTACTTCCACAAG
CACCCCTTCTTTGACTATTTCCACAAGAAACCCCAAGGCCCCGAACCCAAGCCGGATCCCAAGC
CGACGCCATTGCCGGCGAACGGTGGTGGTGGCGGTGTGGGAAACGGTGGTGGCGGCGCCCAGGG
GAACAGTGGCGGAGCTGCGCCGCCTCCCAGCTCTCCACCGGTCTACCACTGAATCGATCATCGA
TCCATTCCATCAATCCACATGCACTTGGTTGCGTGATTAATTAATTTGCAGGTCAGCTTGTTCG
TGAAGAATAAATATAAGTTGTGAGATGTGAGAGGAGTGTGACCGTGTGTGAGATCGATCGATCG
ATCGATGTATGTGTTGGAGACTTGGGAGTCAGTGCATAAGCATTTGCTTTCAGGTGATAAATAA
TTTCAGAGTGCTCATGATTGTTGTGTCTGTATTTATTTGTGTATGTAATGCGGTATTTGTTCTA
CATAATGTAATTTATATATTTATAAGATTGTTCAAGTTGACGTAGAATCGCACCGACACACCTT
GAGCACGTTATGTGCAACTCGCGGCTGCACCCGGAGACGCGCCGCCATTGGGAGTGATTAGATG
CCGCCCAACGAATACCCGCCCGTCAGGGTGAACGCACGTCGGTTTATCCTATGCTCGGCAGGCC
AGCTAGGACGTCCTCTAATACTGTAGAAACGACAGATGACAAGCAATTGAGGATTTGAGGATAA
TAGAATTTGGGATTGGTAGCAAGGAGGGAGATATATGTAGAATATAAAGGGTTTGGATAAATAA
ATTGATTTTGACGATTGGTTACTTGTTGTTTCAATCGTCCTTGGCCCCCTTATATTTTTAGGAG
GGGTGGACTTGCTTCCTGTGGTTTTTCCATATGCAATTAGGCATATAAATCAACTAGGACTCGA
AAATTTCGGTCTAAAACAAGAAAACATGAGAAATATCTAAATTGGACTCGGACTATGTGATTAA
GGTCTAACCGCCTGGATACCTATGGTCTAATCACAGTGCATTGCCCGGTTTGACCGGCCACATA
ATGACGGTCAGACCAGCCTTAGCGGGAAAGCTCTAGCATTTTTTAAATTTGGCTCAAACTTGCT
ATAACTTGACCCTACTGCCAAATTTGATTATCAACATATGCACCCCTATATTTTCTGCAAACTT
GTGAGCCAAAAAATACTATGCATGAGATCATCTAAGTGCGATATCCATCAATACTGGCCATGAA
TGCCTCTAAGGCTTAAATGTTTAATAGTGATGTAAGAAAGCTACGAGAGGCCCCTCTTGTTCAG
ATTGTATTTTATTTTTCTTTGGCCTCCACTCTTGCCTCACCATTTTCTTGTGTGGATTCTTTTG
TGACTGATTCTTTTCTCTCAACCGGCTATGAGATGAGTGTGGTTGATTATTTAAAATCGGTCAA
TGTGGCAACCGGAAATGCCCATAATGGATAATAATATGGTATACAAATAGGCATCATCCACATA
CCATTAAAACTCCATAATGCATACCAAGCGTAATACCATGAAGAAGGAGAAGTAAGTTGCCGGT
GGTGCATACTCGCTTAGTAGATGAACTTGATCTCCTTGGTCGCTTGTCACATTTTGATATCTCC
AGATTGCCATCTTGCCCCCTAAGTATTGAAGTCTTCAATGTGGTCTTCTCCTTGCCATCGGGAA
TTCTCCTTCTCTTGCAATTCAACAGTCTGTATAGGAAAAGGTAGCTCATCCACCTGCATCTTTG
TTTCCTATTGCATTTGGTCACATCAAACATGAACGTTATTTCCTCTTGTCGATTCTTACGAATG
GTTTAGAGTTGGAGTTCCAAGCCCATTCGTAGTTCCAAGCCCATTCGTCTGTGTATACATCAAC
TGTCTCATCTTTCAAAGATTCTTGTTGATCAACTATATTAACATGGGGACAATCGAACTTTAAC
TTTCTGTGAGATTTTGGCCTCTCTAACTCGGCTTTCTTGAGCCAAAGCCTTTTGAAGTAATTGG
CTTACATTTAAGAAAGTATGACCATCTAGCTTTTCTTTTAAATATTCAAGTAAACCAGAATAAG
CCAAATCTACTAAGTCCTTATCAGAAAGTGTTAAACTATAACATCGGTTTCTTGTATATCTAAA
TTTTCTAATGTATTCAAAAGCAAGTTCATTATACTTTTGTTTAACCAATGTTAAGTATGACAAA
TTTAATTCGGTCTCACCACTAAAGAAGTAATCATGAAATTTTTATTCTAACTGAGACCAATCAT
GAATAGAGTGGTGCAAGTGAAATAAACCAAGTAAATGCATCACCAAATAAAGACACAATGCGAA
AAGGCTAAGTTTCAAAATACCACTAGCACTAGCTTCTTCGATTGTATAATAAATTGGTCGATAT
CCTCTAAAGTAGACTGGCCATCTTCTCCAATGAACTTACACATTGAGGCAATCTAAACCCTTGA
TGATATGGAACATTATCATAGTGGTCAGGATAGAGTTTTTGATATATACGCTTTTTAACCCTAA
GTATCTATGCCGAAAGCGTTTTTGAAAGATTTTGCAATCTCATTGCTAAGACTCTTGCATTGGG
TTATGCTCGTGTGCCATTGACTACAGGATCCGGCAAGACTCGTACCTGCTCGTATCCCATATTA
ACTCCTCGAATTCAACTTAACAAGAAATTGATTGTCCGCATAAATATATTGCCCCTAGGAGAGA
AGAGCATCGAATCATAAGCCATAGCCACAAGTCACATCGAATATCAATCAAGAGGAGGTCAATA
GCTAGCCAATGATTCTAAGTCGTCGGATATATTCTTGGTGAATGCTAGTTGGTAGGCTATATTA
GCTAGCTCGCTCCCCTATTGTAATCAGTTTGATACATCCTAGAGATGTTCATATAAATTGGATT
ATGGCTAGTACCCACACCGGGGCCTGAATCAATATAAAAATCCTTGTCTCTTGTCTACTTTACC
AAAATCTCGCGTATACTTTGATACCAACGTCTTCTATACTTTAAAACAAACACTGTTATCGAAT
ATATACTATCGACAAGTATATTCTCTACCATTATACGGACAAGATGCATGTAGTCACCACTAAA
TACACACACCACACTTATACACTCACGACTGTGTTCCAAACATACGTTAATAGCGCGGATATGT
TGATCGAACTATCACAAAACTACAGATTAATTTAATTAGCATCAAATTTATCAGAAACCTAAAG
AATTAAGGTCAAGTATGACATAACTATATATTTAATATTGGAGTTATCACGAAACTACAAAATT
TGGAGGTCAAATCCTTAGCACTACCATTATGTTTGAGCTATAAACGTTGCATTTTTTGTGATTA
AATTGGCACTAAACCTGTAGTTTTGTGATAAACTTAACATTAAATTTGTAGTTTTATGATATAA
CATCTTAAATCAATAGTTTTGCAATAGTTTGAATAAAGTATATGTAGTTTTACTCATTTACTTA
AAAATAGTATCAATCATGCAATTTGGTTGGAGCTGTCCTAAATTATAGAACTATTCTCCATTTT
TATAAAACAGACTAGTAGTACTGTGCGCTAGCTGTAGGAGTACCAGTCGATTAAAGCTTAACTT
TGCTTGTTAAACACCACCAATCGGTGGCAAGAGCATCAACAGTTAACACTGCATGCAGTGTGCA
CGTTCACAGTGCCTCCATGATTTGCTACTCTTAATCTATCGGTGTCTGATCAAATCAAATAAAA
TGCACGGCGTTAATGATTTTAAACCTGCAAAATCGGCGCAAATTGCTAATCATGTTGTACTGTA
ATATAATTAGCTGACCTCAGATCACTCCCAGCTAGAAGCCTTTATCGATCTATATAAACCACAT
GCATATGCCTGAATTTTCTTCACTCATCGACACACACAGCTCTAGCCTCTTGCCACATAGTCCA
AATAGCAATAGAGTTTTCTAGGATTGATTCAGCAATGGCAGCTGTAGCACGAGCACTACTCTTC
GCCGCCCTCGTGATGGCTGTCACCGCCTCTGCGGACGGCGAGGCGGCGGCGATCGTCGTCGGCC
AGGCCAAGTGCGGCGAGTGCTCCAGGAAGAACATGAAGGCGCAGGATGCTTTTAAGGG
Conservation Information
Conserved circRNAs osa_circ_006222 osa_circ_006225
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021