Detail information of Os03g0421000_circ_g.1


General Information
CircRNA Name Os03g0421000_circ_g.1
ID in PlantcircBase osa_circ_020335
Alias Os03circ17718
Organism Oryza sativa
Position chr3: 17516176-17520721  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method SMALT, Segemehl
Parent gene Os03g0421000
Parent gene annotation Zinc finger, FYVE/PHD-type domain containing protein. (Os03t0421
000-01)
Parent gene strand -
Alternative splicing NA
Support reads 2
Tissues panicle
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0421000-01:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAAGAAAGGATTACCAATGTTGATAGACATTGCACCGAATACATTTTGCCATTCTATCTTGGTC
ATGACCGCTGCCACATATCCCACAAACCATTTCATTctttcactatgcccaaggaaagcaagag
gtcatgcagaaatggaaccaaatggcatagacttatgcctcctcttgggatccacaaagacacc
ccataagt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTCACTATGCCCAAGGAAAGCAAGAGGTCATGCAGAAATGGAACCAAATGGCATAGACTTAT
GCCTCCTCTTGGGATCCACAAAGACACCCCATAAGTAGCTCTCTCCATCAATCCCTGTTACCAT
GGTAGATATTAAAACCTCGCTATCAGTCTGTAATTACATTTTATCTTTTTAAACCAAAATATAT
TATTTTTGCAGACTCACAATAAAAGTTAGTTGAGCACAAAAGTATGAGAAATTAATTACAAGGA
TGAATTATTTTGTTTTGCTGTAGAGGTAGAAATCATAATAGAGGGTAAAAAACTAACACTGGGA
ATCAGGTGGAAGCACTTCTGAGGAATATATCAGCAACTTTATATTGTTGATATATGCCCTCATA
ACAAAATTGCAGCTCGTCTCCATGACATGAGATTGACTCTTTCCATTCCTAAAAATATGAGAAA
TAAATGCATCAACATTCATATATGTATTGACAAGAAAGGAAGAACATGAAACAGCATATAAACA
CCAAGTATTTGTCAATGGAACCAGTATAAACCCTACCGGTCAAGTTCAGTGGAGAAGAAGAACA
GGCCAATGTCTTCATAAACTGGTGGATTTATCTCAAAAGATTTTGGCCATTCATCCATTCGAGG
CAATATATCCAACTCTATTATACTAGGCATGCTCTTGATGACATTGAGAACTTTAGACGACACT
TTTGATGGGCAGTAAGCTTTAAAATCAGCAGGATTACAGTTTGATCCATTGGAGACAAGAAAGC
ATCCCCTAAGAGCACAAGAAAATCAGAAACTTTCACTCTATTATGTATAATTAAATCATCTCTA
GTAAAGTAAATTCATTATATGAGGTAAAATTCCTATGCAAAAGAAATAGCAGTTAAACAAATGA
AATCAATGCTGCACAAGGTAATAAGAGATGAAAAACATTTAAAGTACCTAAATTATAAAAACCT
AAGACAGAGGATAACATAGTAAGATAAGCTCTTACTGAAACAATCAACTTGACACAGTGATTAA
TTGTAAGTTACACCCATGTAACATAAATCATCCATTATATTCAAGGACCTAGATGTTTAACATG
GTAGCATGCCACCTCGTAGAGTAATAAAAAGTCACACTGACTACTAAATGGGCATTAGTGTTTT
TTTGTCTTCAGGCAGCTAGCCTAGAAGGAAATAGTGAATATAAAATGACTACTGAATTATGCGA
TATTGTCATTTATCCAATTTTGTTTGTGATCCTTAAGTTCTGACATGAATATAGTCTCCTTTTT
TCTTTCCTGAACAAGCAGTAGAGAAAACACAGGGAAGAGAAAAGGAACCCCAGCCCTAAACTCA
AACCAGTCTTACAATTACAAAAGCCTCAGAACGACCCCCTTACTCGGTAGGGACTAGCGGCCTA
CTGAGCAAATACCGGAGCTTAGAAGCTCCAACCAAGCACAAAAGGGCACTTTCATTTGCTACTG
CTTGTACTACAGACATCACACTAGGACTTATGCCATCAAACACACTACCATTCCTATGCTCCCA
GATCTCCAAAGCCACAAGTATAACAAATGAATTGAAATCTTTCTTTAAGTCCTTTTCAACATCT
CTCACTACCCTGAACCACCAGCTAAAGAAGCGATTTGCGTCTTGGCTCAGCACAATGGAAGAAG
ACAGTCCGAACCTTTGAAGGATCAATGACCGAACTTGCCGGGTGTAAACACACAGAATCAATGA
CTTATAGACGCATTACTGATACTTGTTTTTCTTTACCTTATGGGATTACGGGAGCTATTGTCTC
CGTGTTTCTTTTACTTTTGAGAAGATTACAGATGCCAATTTGGAAAGAATGGTCAGTTGACAAT
ATTTCAACCATACAATATTCCTGCTTACTCATACAATGATATGTAGTTAATTACACTCCTGAAT
AGCTGATAAATTTTCAATTTACCCAAAACTAACATCAACAACCAATAACCTTGAAATTGTAGGT
CTTACTTCAAAAGAGGTAGTGGTGCACCTCTCAAACAAATGGAGTGAGAAACGAAGGAGTGTTC
ATCTGCATGGGCATGTTTCACATGCTCATGCCTAGAGAAAATAAGAGATAGGCTTGCATAAAAA
AAAGGTGCAATATAACTCAATTTTGTTACAGCATTAAGGGGTACAGAGTGAAAATATTACCCTA
ATTACACCCTTGATTTCCTTTGTAAACTTTCATCGTGAAATTACAATGAAAATGGTCATTTATT
GTGCAACTATGAATGAAACTGTACATTATGTCCAATAGATCAATAACTAATTCTGACATTTTTG
AATTATGTGGGTCATGTGGATCTTTTGCCAATCTTACAGCAAAGAATAAATCAGTCCCATTGGG
GTATAGCTAGCTGAACCGAAGCTGTTCATTTGTTATCTTAGGTATAAACATATATCAAAGTTGA
CTATGCAGATGCGATTTTTAGTTCCAGAAAAAAGAAAACCATTGTGAATCTTACTCTGAAAATG
GTGAATACAGACCTACCATACATATATGGTATATATACATAAGAAAAGAAACTACACAGACAGT
AGCATGCAACCACATAAAACACCCATACTATTCAATTATTATATTTCAAAAGGTATAACTCCAC
ATCTGCAATTTGGTGAGGAAAGAAATTGCTGTAGTAAACTGTTTAATTTCTCGTCAATGTCAAC
TTGATACATGCTAAATACTACCAATAGTAGATGCAGATCTGCGGCAGACCTGCAGTCCAGTAAT
GACTGAATGTGCGCGTAATGTAGGTCATCAGAGTAACAGTCAATGAAAATGGAATCACTGGCTC
TACATGTGCACCTATGCAAAGTTTTGTAAAGCGGTAGGGTAGTAAGTGAGTGACCACACTATGG
GAACCACAACAGAAGCTCAGTTCACATTTTAACCAGAACAAAGGTAAAGATTGCTGAAATAAAA
TAATTACAAACAAATATAGCATGTTTTACTCACGTCCAACAAATTTCTGGTGGAGGTTGTCTTG
CATATTCCACACTTGAATTAATGACCACCAGCATGCCTATATCATTGTCCGGACTCATTTCAGA
TCCACGTCCAATATCAGTACCTACTAGAGCAGGACAATAGACCATAATAAATAAATAACACATG
AAAACTTGGTTTGAGATTTGAACAAAAATATATTAAGTTCAGAATTATGGTTTGAACTGCTAAC
AAAAAGAATATACTGTATAAAAAATTGTAATGTTAATCCATCAAGAAAATGCTTTTTATATGTG
TAATACCTGTAACATTGGATCCACTCTTTTCTCTAGGATCATCCCGACTCTGGGGGTTCATTGT
TACTTTATCTGCACTAACTACCTTCTTTTCCCTCTGCTCATTTTGAACCTGAAAGTCAATTTTT
CCTCTAATTGCTCTGCTTCTATGACATGGACGAAGCATCTCACCTGTTTTCCATTGATTACGTT
TTCTTGTAAATGTCATTTTCTGGTTGATGCAATAGCTTAATATTTCATAGATAAAGAAAAACTA
GGTATATCAATATACCTGATTGTGCTTTCTGTTTCATGTTTATACCAGCAATCTCTGTCTGGTT
CTGACTTGCACCATCACCTCGTTTCAGAAAAGGCCCTTGAGTGTCACTCCTACAGGGGGACTGC
TGCCCATTTGGAAATTTCCGATGGAACTGGCTATAAGCACGATTGTCACTCCTACTAGATGACT
GTTTCGCATTTGGAGGAGATGCAGGACGGACATGACTATTTGTACGTCGCACATGAAAATTTGA
CCTACAATTTGGTGGTCTCTCATTATTATTCAATAATGACACCTCTTCATAAGAAATGTATTTC
ACTTTGGCATTTTCAAACTTGTTTGGAATTTTCAGGCTATCTTGATGGACTCTATTCCTGATAG
TTTGCCCACCTTCACATGAGCAGACAAGAATTATGATCTGCACTATTAACTCAAAAAATGAGAT
GGTTTGTATTATTTAAATGAGAAAAAAATATTACCTTGACTAGGAGTTTGGTCCCAATTGGACT
TGTTTTGGCACTCACAACAACACCATTCATCAGGAACATCATATGTCACCACTGGGAAGCAATA
ACTTCAAAAGCAGATGGAAAATCTTTCAGTGATTTGAATATATGTTTAACAACCAACTGCAGGA
GCTTCCCTAAATAACTTTAAAAGCTAATGGATAAAGACATGTTTTTTATGTTGGGTAAAAAAAA
TGAAAATGGTACATTCAGGACCAGCTATAAAATGTCCGTGTCACTTGCTCTATTAAAATAACCA
TACAAATTTCATATCAGATATTTCTGTTTCCCTTATGGGTCAGTTTTCTCTCCAAGCATTCTGA
CAAATAAACATGCTAGCAATGAATTGGTACATAGGTGTATATAGGCAGATGTCTATGTACAAGT
CAATAAAGAGGAAAATTAGACAGTGTAGGAAAAGAAAGGATTACCAATGTTGATAGACATTGCA
CCGAATACATTTTGCCATTCTATCTTGGTCATGACCGCTGCCACATATCCCACAAACCATTTCA
TT
Conservation Information
Conserved circRNAs osi_circ_013154
PMCS 0.090301716
Functional Information
Coding potential Y
Potential coding position 17520251-17516270(+)
17520061-17516274(+)
17516289-17520719(-)
Potential amino acid sequence MSPLGSNNNVDRHCTEYILPFYLGHDRCHISHKPFHSFTMPKESKRSCRNGTKWHRLMPPLGIH
KDTP*(+)
MDSIPDSLPTLTRSLVPIGLVLALTTTPFIRNIICHHWEAITMLIDIAPNTFCHSILVMTAATY
PTNHFILSLCPRKARGHAEMEPNGIDLCLLLGSTKTPHK*(+)
MERATYGVSLWIPRGGISLCHLVPFLHDLLLSLGIVKE*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015