Plant Circular RNA Database

Detail information of Os02g0326000_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os02g0326000_circ_g.1
					
						ID in PlantcircBase
						osa_circ_014485
					
						Alias
						Os02circ11861/Os_ciR428
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 13120196-13120648  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						SMALT, Segemehl, circseq_cup, find_circ
					
						Parent gene
						
							Os02g0326000						
					
						Parent gene annotation
						
							Protein of unknown function DUF2232, membrane domain containing 
protein. (Os02t0326000-01);Similar to Membrane protein. (Os02t03
26000-02)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							NA						
					
						Support reads
						2/76/7
					
						Tissues
						leaf/root/root
					
						Exon boundary  
						
							No-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0326000-01:3
Os02t0326000-02:3

General Information
CircRNA Name	Os02g0326000_circ_g.1
ID in PlantcircBase	osa_circ_014485
Alias	Os02circ11861/Os_ciR428
Organism	Oryza sativa
Position	chr2: 13120196-13120648 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	SMALT, Segemehl, circseq_cup, find_circ
Parent gene	Os02g0326000
Parent gene annotation	Protein of unknown function DUF2232, membrane domain containing protein. (Os02t0326000-01);Similar to Membrane protein. (Os02t03 26000-02)
Parent gene strand	-
Alternative splicing	NA
Support reads	2/76/7
Tissues	leaf/root/root
Exon boundary	No-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0326000-01:3 Os02t0326000-02:3

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							TTAATGTTGAATAGATAAGTGAAGATACCAATCCAAGAATATTCTCTCTTATCAGAAATGACGA
CAATAAAACGTATCCACAAGCCCCTAGAGCCCGGGTctgtaaactcaaattgctttgtccagcc
atcttggaggtctcaatgaaggctttattccgagcttagtcaggaatattgtatacattatatg
tagtagga

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							Transcript length: 117
Transcript exons: 13120196-13120221,13120558-13120648
CTGTAAACTCAAATTGCTTTGTCCAGAATAGATAAGTGAAGATACCAATCCAAGAATATTCTCT
CTTATCAGAAATGACGACAATAAAACGTATCCACAAGCCCCTAGAGCCCGGGT
Transcript length: 215
Transcript exons: 13120196-13120302,13120541-13120648
CTGTAAACTCAAATTGCTTTGTCCAGCCATCTTGGAGGTCTCAATGAAGGCTTTATTCCGAGCT
TAGTCAGGAATATTGTATACATTATATGTAGTAGGAAGATAAACGTCAATCTTAATGTTGAATA
GATAAGTGAAGATACCAATCCAAGAATATTCTCTCTTATCAGAAATGACGACAATAAAACGTAT
CCACAAGCCCCTAGAGCCCGGGT
Transcript length: 302
Transcript exons: 13120196-13120648
CTGTAAACTCAAATTGCTTTGTCCAGCCATCTTGGAGGTCTCAATGAAGGCTTTATTCCGAGCT
TAGTCAGGAATATTGTATACATTATATGTAGTAGGAAGATAAAGAATCCACAGTTGAGTAGAAG
CAGCGTTCCAAAGAGTACATAAATTGCATCCATGGAAGGAATCGTGTTCACCCCAGCTGCCGCC
AGAATGTATGTCAGGGAAGCATGTATATTGACTGTTATCAATCCAAGAATATTCTCTCTTATCA
GAAATGACGACAATAAAACGTATCCACAAGCCCCTAGAGCCCGGGT
						
						Genomic sequence
						
							CTGTAAACTCAAATTGCTTTGTCCAGCCATCTTGGAGGTCTCAATGAAGGCTTTATTCCGAGCT
TAGTCAGGAATATTGTATACATTATATGTAGTAGGAAGATAAAGAATCCACAGTTGAGTAGAAG
CTGCAACAGAAAACAAAGTTACAACAAGAAAAAAAATGGCTCGCTTAATAAGCACAATTTGTCA
TAACATTACCAGCGTTCCAAAGAGTACATAAATTGCATCCATGGAAGGAATCGTGTTCACCCCA
GCTGCCGCCAGAATGTATGTCAGGGAAGCATGTATATTGACTGTTATCTGAAATTGAGCAAAAG
TTACTGAACACAAATATTATCTTTCCGTCAATCTTAATGTTGAATAGATAAGTGAAGATACCAA
TCCAAGAATATTCTCTCTTATCAGAAATGACGACAATAAAACGTATCCACAAGCCCCTAGAGCC
CGGGT

Sequences
Splice junction sequence	TTAATGTTGAATAGATAAGTGAAGATACCAATCCAAGAATATTCTCTCTTATCAGAAATGACGA CAATAAAACGTATCCACAAGCCCCTAGAGCCCGGGTctgtaaactcaaattgctttgtccagcc atcttggaggtctcaatgaaggctttattccgagcttagtcaggaatattgtatacattatatg tagtagga
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 117 Transcript exons: 13120196-13120221,13120558-13120648 CTGTAAACTCAAATTGCTTTGTCCAGAATAGATAAGTGAAGATACCAATCCAAGAATATTCTCT CTTATCAGAAATGACGACAATAAAACGTATCCACAAGCCCCTAGAGCCCGGGT Transcript length: 215 Transcript exons: 13120196-13120302,13120541-13120648 CTGTAAACTCAAATTGCTTTGTCCAGCCATCTTGGAGGTCTCAATGAAGGCTTTATTCCGAGCT TAGTCAGGAATATTGTATACATTATATGTAGTAGGAAGATAAACGTCAATCTTAATGTTGAATA GATAAGTGAAGATACCAATCCAAGAATATTCTCTCTTATCAGAAATGACGACAATAAAACGTAT CCACAAGCCCCTAGAGCCCGGGT Transcript length: 302 Transcript exons: 13120196-13120648 CTGTAAACTCAAATTGCTTTGTCCAGCCATCTTGGAGGTCTCAATGAAGGCTTTATTCCGAGCT TAGTCAGGAATATTGTATACATTATATGTAGTAGGAAGATAAAGAATCCACAGTTGAGTAGAAG CAGCGTTCCAAAGAGTACATAAATTGCATCCATGGAAGGAATCGTGTTCACCCCAGCTGCCGCC AGAATGTATGTCAGGGAAGCATGTATATTGACTGTTATCAATCCAAGAATATTCTCTCTTATCA GAAATGACGACAATAAAACGTATCCACAAGCCCCTAGAGCCCGGGT
Genomic sequence	CTGTAAACTCAAATTGCTTTGTCCAGCCATCTTGGAGGTCTCAATGAAGGCTTTATTCCGAGCT TAGTCAGGAATATTGTATACATTATATGTAGTAGGAAGATAAAGAATCCACAGTTGAGTAGAAG CTGCAACAGAAAACAAAGTTACAACAAGAAAAAAAATGGCTCGCTTAATAAGCACAATTTGTCA TAACATTACCAGCGTTCCAAAGAGTACATAAATTGCATCCATGGAAGGAATCGTGTTCACCCCA GCTGCCGCCAGAATGTATGTCAGGGAAGCATGTATATTGACTGTTATCTGAAATTGAGCAAAAG TTACTGAACACAAATATTATCTTTCCGTCAATCTTAATGTTGAATAGATAAGTGAAGATACCAA TCCAAGAATATTCTCTCTTATCAGAAATGACGACAATAAAACGTATCCACAAGCCCCTAGAGCC CGGGT

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_011605 						
					
						PMCS
						0.373348087

Conservation Information
Conserved circRNAs	osi_circ_011605
PMCS	0.373348087

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Lu et al., 2015;Ye et al., 2015;Ye et al., 2016

circRNA

Detail information of Os02g0326000_circ_g.1

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