Detail information of BGIOSGA001337_circ_igg.2


General Information
CircRNA Name BGIOSGA001337_circ_igg.2
ID in PlantcircBase osi_circ_010205
Alias Chr01:23813910_23821968(MH63RS2), Chr01:23813910_23821968(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 25118394-25122927  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRCexplorer2, CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA001337_circ_igg.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-NN
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGGTGGAGGGGGCAGGTGTACTCACAGCCCCGGAGATGCACTGGGCGTGGCCCTGGACGGTCTC
CTGGCTGAAGGACTCGCCGCAGTCGATGCAGGAGAGttgggtgctagccgcgcattgcgcgggt
cacccatctagttgctcttgtaagagacatatctagtggactcatcgtttcgcttgtaaacgat
tgtactgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTGGGTGCTAGCCGCGCATTGCGCGGGTCACCCATCTAGTTGCTCTTGTAAGAGACATATCTAG
TGGACTCATCGTTTCGCTTGTAAACGATTGTACTGTTAAAAGCAAATGCTTAAAAATAAACTAA
GATGGAAAAAAAAAATCCTAAAGTCAACTCAAAATTAAAATTTTTGTTTATGCTTATAAGTTAA
AGGCTAAATGATGTGGATTTTAAATCTGAACTACCATTGTGAAGGATTTGCTGAACTTTTATTC
ATTGACGAATTTAACTCTCTGATTCTGAACCAATAATCTCAATCAGTATACGTGGGCAATTACA
ACTTCGGCGCAATTTAGATCGATCGGCCAGGAATAACAATTTCTGACATCACGTAATATACGTT
TAGTAATGAATTTTATTAGCGTAACAGCCTCTCAGCACACCACTACACTGTGAAACTGCTGTGC
ATATCCGGATATTTCATAATCTAAATTTCAGCATAAAGAGCTACTAAAACATTGTGCACAACAT
TATCCAAAATCACTCTATGAATATTTGCACTTTTGAGGTGATCCCATCCATGAGTTGCTTGACT
ATGGAGGATTTCTCCCTGTCGCCCTTGGGATACCTTGATCCTGTCGGGGTGGGTCGATAGTAAT
TGCAACTCTCTTCGTCAGTCAAAATGATCGTCTGTAAAGCCATAGCTAGCTCCATGACCATTCT
TACAAACTCCATGTATTTCTCCTCTACTTTGAAGCCAGCAATCTTCAGGCTCTTCAGATGCTTG
TGCTTGAATTCTGAACAGGTCGTCTCGCAATACGGCGTCTCTTGCTGCCTACCGTGTCGACTGC
GCATGTCCTTCTGTATCTGTGATCAGCAAGGTCATAACTTTGTTAGGATTGAACACGCATGTCA
CAAAACGATGACTCTGCTATATATGTTTTTGAGGCCGTGGCGACGGGGACGGCGCGGCGACGGC
GCGGAGTTGGGCGTGGCGGTGGGGCGCCACGGTGTCGGCTCTCCGCGGCTCCAGCGACGGGCGA
CGGCGTCGCCAGATCTGGTCTCCCCGCTTGGCCGGGGTGACCGGCGACGGGCTCGGTCGTCGCC
GGCGCCGCTCCACGGACCTGGCAGGGGGGTGGCTAGCGGCGGCGATGGTGGCAGGTGTGGCGGC
GATGAAGTTGGCGACGACGGCGGCGGACTGCGGCGCGTGCCGTGACGCCGGCCCTCGTCAAGAA
CCTCGTTGCCACGAGGGAGGCGTGGCGCCCTCGTCAATGCTCCGGCTGTGAACAACATTCCCGT
GACGCCTTCCTCCACGATGCCAGCGACCCGCGCTCCGCGCTGCACCTCCGATCTGCGCCACCCC
GGCCGGATCTAGACGGCTGGCGTCTGGCGGCGCTGGCTAGCGACAGTGGCGGCTGACGGTGGCG
GCTAGACGGTGGTGGCTGGACGGGGGTGTCCGTGGCGGTGGCGGTGGCGGTGGCGATGGTGGCT
GACGGTGGCGGCTGGCGACGGTGTCGCTGTGGCAGTGGCGGTGGCGGCTGTCGATGATGGTACC
TATGGCGGCGATGGTTGAAGGCCATCATCCGGCTGACGGTGCGTCGGCGGCGGCGGCGGCGGTA
TGTGGAGGCGGGGAAGGGGTCTGGCGGCGGGGAAGGAGGAGTCCGGGTGCGGGCGCGCCGTCGA
CGGCGGGAACAACTGTGGGCGGTGGCCTTGGCCAAATCGCTGAAGGGACAATGTTGTTGACCGA
TGACGATCCTTCTTGTGCGGATTGGTGGTGTGGGTTTGGACAGGGAATTGCGAGCGAAAACCTT
GCCGAGCCATTTGGCAGGCTGATAACGGCGACGCCAAACGCCGTTTGGCGTCGTTCCCCTCCTT
AGAGACGTTGTTTTAGCATACCCCTTTTCTTTCCCTACCATATTCTCCGGGTGAAAACCTTGCC
TCGGTTACGAACGAGCGGTGGCGGCGATCCACGTCGCATCCTCCTTGGGGGCACCGCTTTAGAG
AAATCTCTTCGTGCAAGGATATTGTCATTGGTCTATGCATTGGCTTCGAACTTCAGTCCTAGGC
TTTGTCGAGGCCTTCTAGCTCCACATTTTGTTTTGCTTTTCTCAGTTTGTGTCCTCTCTTCTCT
TGTTTGATGTGTTCAACTTGTCTTGAACTACACTCTCTTCTGGAGTGGATCTTTGTAATAATTG
GTTGTAGTTCTTTTTGAACAAAGGCCGGGATATTATATTCCATTATCTAAAAAAATATGTTTTT
GAGGCTGAAACTTGATGGAGATCAAGAGAAAGAGGTACTCATTTTGTGTCAGACAAAATGCAGT
GCCCTAAAGACTAGGTGACATTATTAGAGTGGTTTCAGTTTTTAGTTCTGTGGAATGCGTATTA
GTTTCATTGATAACAAACTGAATGAACTTGCAGGTAAGAATTAAAAAAAGGCATACCGAAAGGT
TGAAGTTCTGGAGGAATGGTGCTGCCTGAAGGAAGAAGATCATCCATAACAACTCATATTGGCC
ATCACCAAGATTAAGCACGGTCAGCTTGCTGAAGGAACCCTGCAATGGCCTTGGATCCTCAAGT
TCTATCCAAATCTGAACGAAAAAAAAAATTCAAAAACAAGAAACTGTCAGTCAACTGCCACTCC
TCGCTTACGAACATGAGCAAGATGGATTAAAGAATAAAGATCGATTTTCCGCCGTTCAAGAAAC
GCAGAGAAAGTTGGCTGACGCTTCTGGCATTGACCAAGAGCTTACCCCCCCCCCCCCCCCGGGC
GCGTACGGATGTCTGCCCCGTGGATGAGGCTGAGGTCGGCAAGGATCGGTACAGAGCCGAGGGA
CACCGGAGCACCATCGGGGAACCAGCTGTCGACGGAGAGCCGCGTGAGCTTGGGGATGCTGCGC
AGCACAACCAGCACTCAAGCTCCAGCACCCTGAGCGCCGACGACCCCGGTGCGACGTCGATCAC
CAGCTCCTCGCCGGGGACGACGCCCGTCGCAGTCGAACACCGCCAGGTGCACAGCCGCGCGCGT
GCACGCGCTGAGGAGGACGGCGACGTCGGCGCTTCTCAGCTGCAGGTGCCGCAGCTCGAGCTTG
GTGAGCGCGCCGAACACGCGTGGCGAGTCCACCTCAATTCCAAACGAAAGGGTTTCGAACAAAG
GATTCTTTAGAGTAATTTTAGAGGAATTCAATCTTATAAAACATTTTGTTATGTGGTCATTTGA
ATCAAAAGAATAACTAAAAAAATCATATGAATTTCCTTTGGATTAGCTCAAAACCATGCAATTT
TTGAAAAATTCTAACATGAGCTTCAACCACCTGGTTGCGTCGGAGATCGCCAAGAACCTGGATA
CCGCGCGGCAGAAGCGACCCGCAACCCGGTCCAGCGCGCGTTTGTCCACCATCCATAGCTCGAC
TCCACTCGGGATGAACTTCTTGACGCTTATCCTTGGCTCCAGCAGCAGCCATGGGAGCCACCGC
CACCGCCTCGACAGGCTGCACGTCCTGATCGCCTCCACGCGTGCTGCCAACTCCTGCAAGATGA
GCAGAAGGATGTCGTCCGGGAGAGGGCTAATCCTGTCTTCCCCTTCAGCTTGCCTGGATGTAGC
TGCAGATGCAAGGTGGTTGCCTGCGCACGAAGGGAAGATCTCCATGGATGCTTTGTTCTGTCCC
TTGGGAGGACCATACTTCTCCTGAAAAGGGATGCAGCATGGTAATGATTAAGATAATAAGATTC
AAACCACAATTTACCATGAATCTATAGCCAACCTAAACGAATAGAATAACCTTAGAGAGTTAAA
CATCCCTCAAAGAATTCAGAGAAGACCTATGTTATGTGGAGCTCGACTGCTCAGTAAATTTTGA
TGGAACATAGGCTTCCTTCGTTCCAGCTCCCTCCGCCTTGTTTACCGCGCGCACGCTTCTTAAA
CTGCTAAACTGTGCGTTTTTTACAAAAATTTTCTATACAAAAGTTGCTTACAAAAATCATATTG
ATCCATTTTTAAAAATAAATATCTAATACTTAATTAATCACGTGCTAATAGACTGCTCCGTTTT
CCGTGCGCATGGTTAGTGTTGGGAACACAGGCTAATGAACGCAGTAGAGACCTATTTAGTGGAT
TACTTTAAGGCTTTGAAAGCGTTTCACCCTATTCAGTGGATTACTTTAAGGCTTTGAAAGCGCT
TCACCGGTCAGTTTCACAATAATCAGATCACCAAATCATCCCCATCTCTGCAGTTGGTTCACTA
ATAAGAACATAATGAAAACTTACGAATTCCACCCTAATCCCTATCAACTAAAATGAACGAAAAA
CTGAAAGCAATTCGACCTGGCCTCACCATGCAAGCACGAAACATTTCCATCCAATACCATTCGA
TTCGACGCCAATTCAAACACAGGTTACATGGGAAAAACAAACGAATCACATTTCACTAGAACTG
CACGAGCAATCAAGACATGGGTGGAGGGGGCAGGTGTACTCACAGCCCCGGAGATGCACTGGGC
GTGGCCCTGGACGGTCTCCTGGCTGAAGGACTCGCCGCAGTCGATGCAGGAGAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021