Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d018575_circ_g.1 |
ID in PlantcircBase | zma_circ_002189 |
Alias | circ46 |
Organism | Zea mays |
Position | chr5: 223581185-223583412 JBrowse» |
Reference genome | AGPv4.38 |
Type | ei-circRNA |
Identification method | KNIFE |
Parent gene | Zm00001d018575 |
Parent gene annotation |
Epimerase family protein SDR39U1 homolog chloroplastic |
Parent gene strand | + |
Alternative splicing | Zm00001d018574_circ_ag.1 |
Support reads | NA |
Tissues | seedling leaves |
Exon boundary | No-Yes |
Splicing signals | GT-CA |
Number of exons covered | Zm00001d018575_T001:5 Zm00001d018575_T003:10 Zm00001d018575_T002:9 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.17214274 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | zma-miR2118d |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chen et al., 2017b |