Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G18950_circ_g.5 |
ID in PlantcircBase | ath_circ_003367 |
Alias | Ath_circ_FC0424, Ath_circ_FC0425 |
Organism | Arabidpsis thaliana |
Position | chr1: 6548475-6549959 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, KNIFE, PcircRNA_finder |
Parent gene | AT1G18950 |
Parent gene annotation |
DDT domain superfamily |
Parent gene strand | + |
Alternative splicing | AT1G18950_circ_g.1 AT1G18950_circ_g.2 AT1G18950_circ_g.3 AT1G18950_circ_g.4 AT1G18950_circ_g.6 AT1G18950_circ_g.7 |
Support reads | 1 |
Tissues | whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G18950.2:4 AT1G18950.3:4 AT1G18950.1:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.123749595 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017;Chen et al., 2017a |