Detail information of 1_circ_ag.11


General Information
CircRNA Name 1_circ_ag.11
ID in PlantcircBase ath_circ_006919
Alias NA
Organism Arabidpsis thaliana
Position chr1: 19346446-19350864  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing AT1G52000_circ_g.1 1_circ_ag.2 AT1G52000_circ_g.3 AT1G52000_circ_g.4 AT1G52000_circ_g.5 AT1G52000_circ_g.6 AT1G52000_circ_g.7 AT1G52000_circ_g.8 AT1G52000_circ_g.9 AT1G52000_circ_g.10 AT1G52030_circ_g.1
Support reads 3
Tissues inflorescences
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGAACATTAGACTCGTCACCACTTCAGCTTCAACACCGAAAATTTTATCATAGTAACCTTCCAC
TGAAGTGATGTACTCACTTGGATAATCAAGCTCAAAcgtttcagttccaagtaatgtttgcttc
ccatgacgatcaccgaggattgcttgagagcctttgttgtactcaaacgtaacgaaagctacac
catcgttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGTTTCAGTTCCAAGTAATGTTTGCTTCCCATGACGATCACCGAGGATTGCTTGAGAGCCTTTG
TTGTACTCAAACGTAACGAAAGCTACACCATCGTTTCCTTGACCTACAAGTATCTTTCTAACAC
CATCAAAAACACCATCATCCCAAGAAGCTCCTCCATTTCCACCTCTTGCTTGTAGTTTCTTAGA
TGTAGAAGGAGTCGATGGCGTAGTTGAATTTGTTGTTGGAGCGAAATAAGCGCCAAGAGCATAA
AGAACATCACTAGCTTTCCCATGGAATCCCACAAGTTTTCCTCCTTTACCGTCTTTAAGTTCCA
ATTTCTTCTCAGTCTCCATTCCAAAAGGTTGTGAGGTTATTCCCTTAAAGGTCTTGAAGACAAG
AGAAGTGACGATTTCACTCTTAAAACCAAAGACATTGTCGACAGAAACTTCAATTGATGTGATG
TAATCATCAGACTCAACCTCAAACTCCTCTGTTCCTAACACTGTCATTTTTCCATGCTCCCGTG
TCTCTCTTTTCCCATCTTTTCTGTATTCGAACTTCACATAAGCTACACCAGAATCACCTTGACC
AATATAAACCTTTCTTACATGATCGAAAGCACCATCGTCAAATATTGTTCCACCATTTCCTCCT
AGAGCTTCCACTTTGTTAGGAGGAGCTGGAGCTGGAGCGGGCGTGGGTGCGGGAGCTGGAACGG
GCGCAGAAGCGGGAGCGGGCGAGGGAGCTGGAGCTGGAGCGGGCGCGGGCGCGGGCGCGGGAGC
TGGAGTGGGAGCAGGAAGAGGGGCAAAATGTGCACCAAGAGCATCAATAGCTTCACCGGATCGA
CCACAAAACCCAACAAGTTTAAAACTTGTTTCTTCGAACACAAATTTACTACCGACCACATTCC
CAAAAACAGGGGAGGTTCTTCCTTTTGATGTCGTAAACTTCAGCGACGAAAGGTAACCATCGAT
TGTTCCCTCGACCGATGTAATATGTTCATTAGGATAATCCACTACAAACTACAACCAAATTCAA
AAATTTATCCAGTCAAAAGAGACCAATAAAATCTTAGTAAACAAGAAACAACACAAATATTTCT
ATGAAGATACCTCTTGTGGAGCTTCTTGTCTCTTCCCATGAGCATGTGGTACCATTCTTTCTCC
TTTCGCATACTCAAACCTGACATAACTCACAAACTTACCATTTCGCCCAACAAGCACTTTTCTA
ACACCATCAAAAGCACCATCGTCCCAAGCACTCCCTCCATTCCCACCTTGCGGTTTAAAGTGCT
TAAGAGAAGAGTTCACAGCAAAGAAGTGAGGTCCAATGGCATCAAGAGCTTCACCAGAACGTCC
ATGGAAACCAAGAAGCTTTCCTCCATATTTGGACTCGAGCATGAATTCTTTCCCAGCTGGATTC
CCTAGTAATGTCGTGTGACCAAGGATTGGAGAGGTTCTTCCATAAGAGGTTTTGAAGAGTAATG
ACTTGATCAACGCTGATCCGTAACCGAAAACAGTGTCGTAGCTTCCACCAACGGCTGTGATATA
TTCATTCGGATAATCCACTGAAAACTGCATTTCATTTTCCATTAAAAACAAAAATTTTACGAGT
TTCATAAGAACCAAGTGAATAATAACAAAGTCATGGTTTATTCATTACCTCTTTTAGCTGCCCG
CGATTAGTCCCGTGTTCACGAATTTCGAATTTTCCGTCCTTTTCGTATTCAACCTTGATATAAG
TTACATTGTTGAAGTCTTTTCCAACAATTACTTTCTTCACACCATCAAAAACACCATCGTCGAA
TGCTCCACCCTTGTTACCACCCATCGCTCCCACCTTTTCAGACATTATTTCTATCTTTTAACTT
CAGAAAATACCTGAAAGATGGAAACGTTTTCATAGAAACACACTAAGAAACAAAGAACCGAATG
GTCTCCTCATATGAAAAACAGAATAAGAGGAAGCAACACAAACTATGTTTTTTTTTTACTTATC
ACAACTGTGAAGCAAAAAACGTTATAACCCTAGATAATTAATTACTTTTTTTGTTGAATATTAT
TTCTCAGGTTCCATGATTCAGGAAATACTTTTTCAGATCTTTGTCTTCTTTTGAGTCTTTGACA
TAATTATTATTTTTACATACTTAACAAGAGGAAATCATTAGAAAAAATTTCTGGATTTTGACAA
ATTCATGGTTTACACTATCATTACTTTAATTTGCCTCTGCAATTTCCTAACAAACTAATCAGTT
TTGACGTTATAAAGAGAAAAAGAAGCCTAGCTTAAAGCTATTGTTAAGAAGGAAGAAATACAAA
ATTGGAAAGAAAAAAGAAAATAATATAATAATTTGTTTATAAGTTCTTTGAAATCTAGAAGTAG
TCACTAGTTAGAGAAGAAACACAAAACATAAAATATTCAAAATACGTTTTTTCGCTGATTAATA
CTCAAGAAAACTCGAGTAAAACAAAAAAAGAAGTGAGACTGAGACATAGTAACCTGAGTAAAGA
GGGTACGATGAGGAATGAGAGAGTAACTTGCGAGTTTGTGGATAGTGATAGCAAGGAATAGTAA
AAAAATTCTTATATAATGTGAAAGTGAAAACCTCACTTAGACAAAGTCTTTATATTCTTTGTGA
CAATGAGAGGAGTTATAAATTCTTGAAAAGGAAACGGTTACATTCCTTTTTAAACGTGAGAGAA
ATGCTTCCCACATGGTCCAACTAACAAATATAAAGCCAATAAACCATACATTTGTTATACCAAC
CAAAAAGTAACAAAAATCAATAGGCACCTATTTTTTTTAATATCCATCAAAAAAATTTATGCAT
CGCATATTTTTGGAAATTTGCAATATAACTAAACCAGTCTATTAAAACCTATATTTCTTGGGGT
GAATTTCTGTCTATCAATCTGGTTGCGACACGTCGATAAATCTCGACGAAATTGTTCTATAAGC
AAGACAGCAAAAGCTTCGGGTCCCTAGAAAAAGGATTATTACATGGTCAGACTCTATAGCGCCC
ATAGTGAGTGAGCTTCACGGCCACTGTTCAAGCCAAGAAGTATATGATACCAATATATTAAACA
CGGCCAGTATATGTTCGACTAAGAAATCATCAATCAAAGTCAAACGGACGGCACAAGGTAACCC
GATCACCGGCCTCATGGGTCATGGCCATCAAAAGCGTGTGATACTGGATTTTATGGCCCGTACA
ACTAGAAAGATCTTACCCAAGACATTAAGCCAGAACATAGTGGCCCTGGTTTTAATGGGTTACA
AGCAAGAAAAAAAGAAAAAATTAAAATCAAGTGATATGAAGGAAGAAGGGTTCGAACATTTAAC
CCTTTGACGCTTCAAGTAAGTGAATGTCTAATTTCGCTGATGATGCTTTTGGTGTGTAATTTTT
TTAAAATATTAACCAACAACATTTAACATTTTCAGCATATATTTTCTGTTACTTATTTTATGAA
TAAACTTTTGCAGCAAATAAAACATTTTTCCCATTAGGCGTTTGAAATTTAAGAACATATTTTA
TGAAAAACTAAAAATATAAATACTTTAAAAATATGGCTTTTTCTTTGCAGTTTTTTTTTTGACA
TCTTTTTTTTTGACATCAATTTTTGCAGTTTTTTAGATGTAAAACATACACAAAAACTAACCAA
GATCTAAAAAGAAATTGAAAAGAAACGTCCTCTATGAAAAATCAACAAGTGACAAGACAAGACA
CCAGCAAGGCAGAACAATAGAAAATTACATGTTCGCATAAATCATTGACACTAAAACATCCCCA
CACAGGATAATAGAATGTAAGAAGCAGATTTACACGTTGTTTCTTTCGAAAAAAATTACCAGTT
AACAAATGATCAAAAATGTTATTTCTTTTTTTGTTGTGATTTTTAGTATTGGTTATCGTTCAAA
GTATTCGTCGCAAGAAATTAAAACTGCACAAGTTCCATCAGTGGCTCTTCCAAGTTATGATAGA
AAGACCAAAAAAGAGATAAAAAAGAAACATCCTTTATTAAAATCGACAAGTGATGATAAGACAC
ATGAATGCAGAACATTACATGTTCGCATAGAAGCATTGACGCTAAAACACACACCCTAATCCAT
AAGCATGCATGGTCCATGGACCTTATTTTACGGAATCATCAGAAGAAAAAAACCTAAATAGCAA
CTCTGTAATTGGTGAAAATGGGCACGATATGGACTCCGATCTGATGAACCAAATCACCCGCTTT
TCCATGGAACCCAACGACCTTGTAACCGTCTTCTTTAAGCTCGAAATGTTCCCCAGCAGTCATT
CCAAACGGCTGAGACGTTCTCTTGTTAGTCTTGAACATTAGACTCGTCACCACTTCAGCTTCAA
CACCGAAAATTTTATCATAGTAACCTTCCACTGAAGTGATGTACTCACTTGGATAATCAAGCTC
AAA
Conservation Information
Conserved circRNAs NA
PMCS 0.648520485
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017