Detail information of BGIOSGA023784_circ_g.6


General Information
CircRNA Name BGIOSGA023784_circ_g.6
ID in PlantcircBase osi_circ_007398
Alias 7:25716494|25717752
Organism Oryza sativa ssp. indica
Position chr7: 25716494-25717752  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA023784
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA023784_circ_g.4 BGIOSGA023784_circ_g.5 BGIOSGA023784_circ_g.7 BGIOSGA023784_circ_g.8 BGIOSGA023784_circ_g.9 BGIOSGA023784_circ_g.10 BGIOSGA023784_circ_g.11 BGIOSGA023784_circ_g.12
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA023784-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTGAATTATGTCTGCGTTTCCTTTGGATACTCCAGAAGCTACAGTTCCAATTCCTGCTTCAGC
TACAAGCTTTACAGATACCTTCGCTTTTGGATTGATctcttctgcaacaaagaggaagtagttt
acaagatcaccaggaacaccaggaaacctagcacgaagttcttctctctgcaggtacacagaat
gtaggata
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCTTCTGCAACAAAGAGGAAGTAGTTTACAAGATCACCAGGAACACCAGGAAACCTAGCACGA
AGTTCTTCTCTCTGCAGGTACACAGAATGTAGGATAAAATCCCAGTGTAGGTCGATCTTTTAAG
GTGTAAAGATAGAACCTCAAAAGAGGAAGGAAAAAAATAGCTTCTATTGTCATTACCTGACTAG
CAACTCCAACTGGGCAATTGTTTGTGTGGCAAATGCGTGCCATGACACATCCAGTAGCTATCAT
AGCCACAGAACCAAAACCATATTCATCCGCACCCATGGCAGCAGCCATAAGGACATCTAGGCCA
CTTCTGAATCCACCATCCACCCTAAGTACTACCCTCTCTCTCAATCCATTTTGAATAAGTGTCT
GGAGACAAGCTAACTAGCATTAGAACAAAGACGATGTTTCAATAGGTAAAAGAAGCAAATAGAT
GAAGCAAACCTGGTGTGTTTCTGAAAGACCAAGTTCCCAAGGACCCCCAGCATGCTTGATTGAA
CTAATTGGGCTAGCTCCAGTGCCACCATCATGACCTGATATCTGTGTGACAGAAATACACGTAT
TTCAAATAAGTTTTCATAAATAATCTAATTCAAATGTTGCAATAATCTATCTGCGTTGAAGCAA
AAGGTTAGTTTAGTACTACCTCCGTCCCAAAATATAAGAGATTTTTTGGGACGGAGGTAGTACA
TTCATTCAATTTGTACATATGTTCAGTATCTTCATTAGTATATGGGTATTTTTTGAAGAGAGCA
TCATGCACCACACTGCTGAGATTTTGGGATCATTTTAGTAAATTTCTCAAAAAAATCCTCCACA
ATCTATAACAGCTTCTTGGGCACATTTTTCACTAGATAGTGGCATTCGTTAGCAAGTACTCAGT
GTTGAGGCATATGCCACTTTAGTAAAGGAATCATTTTTTCTCAATATAGAGAAAAACAAACTAC
AGAAGAGAGTCCTATCATTGTGAATACCATATATAAATGACAAAATATGTAGCATAAGATAGCA
AACAAAACCCTATGTGACCTGATAGAGGGATAGCATTGCAGCTAAGAGTTAATGGTATAAAAAT
AATAGTTGAATAGCAGTAAACCATGGCAAGAGTTAACTCAATGAATAATTAACACAGAAAAGTT
TAACCAACCTGAATTATGTCTGCGTTTCCTTTGGATACTCCAGAAGCTACAGTTCCAATTCCTG
CTTCAGCTACAAGCTTTACAGATACCTTCGCTTTTGGATTGAT
Conservation Information
Conserved circRNAs osa_circ_035115*
PMCS
Functional Information
Coding potential Y
Potential coding position 25716799-25716496(-)
25717662-25716515(+)
Potential amino acid sequence MAAAMGADEYGFGSVAMIATGCVMARICHTNNCPVGVASQREELRARFPGVPGDLVNYFLFVAE
EINPKAKVSVKLVAEAGIGTVASGVSKGNADIIQISGHDGGTGASPISSIKHAGGPWELGLSET
HQTLIQNGLRERVVLRVDGGFRSGLDVLMAAAMGADEYGFGSVAMIATGCVMARICHTNNCPVG
VASQREELRARFPGVPGDLVNYFLFVAEEINPKAKVSVKLVAEAGIGTVASGVSKGNADIIQIS
GHDGGTGASPISSIKHAGGPWELGLSETHQTLIQNGLRERVVLRVDGGFRSGLDVLMAAAMGAD
EYGFGSVAMIATGCVMARICHTNNCPVGVASQREELRARFPGVPGDLVNYFLFVAEEINPKAKV
SVKLVAEAGIGTVASGVSKGNADIIQISGHDGGTGASPISSIKHAGGPWELGLSETHQTLIQNG
LRERVVLRVDGGFRSGLDVLMAAAMGADEYGFGSVAMIATGCVMARICHTNNCPVGVASQREEL
RARFPGVPGDLVNYFLFVAEE(-)
MSAFPLDTPEATVPIPASATSFTDTFAFGLISSATKRK*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021