Plant Circular RNA Database

Detail information of AT5G15845_circ_g.4

			
						 General Information
					
						CircRNA Name
						AT5G15845_circ_g.4
					
						ID in PlantcircBase
						ath_circ_038481
					
						Alias
						AT5G15845_C2, AT5G15845_C2
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr5: 5173191-5175995  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRI2
					
						Parent gene
						
							AT5G15845						
					
						Parent gene annotation
						
							other RNA
							
						Parent gene strand
						+
					
						Alternative splicing
						
							AT5G15845_circ_g.1 AT5G15845_circ_g.2 AT5G15845_circ_g.3 						
					
						Support reads
						NA
					
						Tissues
						leaf
					
						Exon boundary  
						
							No-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT5G15845.3:4
AT5G15845.2:6
AT5G15845.1:5
AT5G15845.5:4
AT5G15845.4:4

General Information
CircRNA Name	AT5G15845_circ_g.4
ID in PlantcircBase	ath_circ_038481
Alias	AT5G15845_C2, AT5G15845_C2
Organism	Arabidpsis thaliana
Position	chr5: 5173191-5175995 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	CIRI2
Parent gene	AT5G15845
Parent gene annotation	other RNA
Parent gene strand	+
Alternative splicing	AT5G15845_circ_g.1 AT5G15845_circ_g.2 AT5G15845_circ_g.3
Support reads	NA
Tissues	leaf
Exon boundary	No-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT5G15845.3:4 AT5G15845.2:6 AT5G15845.1:5 AT5G15845.5:4 AT5G15845.4:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TCTTTGGGGCGGCATAAGTGGAATCATTTATCTTCTACGTGATAAAGTGATGTGGAAAGTGTCA
CCAAGAAAGGAATCATTAACTTTGAACTTAGGCAAGgtatctctccgagtaaggcttcgagtgt
cagagccatcaccaactgttatgggttgactacctatacaaaggttagacaaactcgtgaatat
ggtatagt

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GTATCTCTCCGAGTAAGGCTTCGAGTGTCAGAGCCATCACCAACTGTTATGGGTTGACTACCTA
TACAAAGGTTAGACAAACTCGTGAATATGGTATAGTTGTTGTTCCATTATTTGTGAATGCATCT
GCATCATTTAGAAAGATTTGCAATTGAAACTTTCGAAGGATTTTCTGATGAAAAGTGTTATAAT
GTTTAATCTGGTTCATAAAGTCATGGTAATGAGAATCATATCGGAAAAGTGACATGAAAAACAT
AGAGACGGTGGATTTTCTAGGATCAAACTCGAATCCGCCAAGTAGTCTTGAGACTACAAATTAG
AATTTACCTGACGCACAAGTTAAAACTTAAAAGGCATTTTGGAGTCCACATGAGCAATAATTAG
ATTTATCATATATAGTATGTAGAAATTTGCACTTGGTAACCATTATAGTAAGTAGTTACAAAAC
ATGACTCATGAGTGTTGTCACATCTCTGTAATTTGGGTTTATGATGATACTCTATACTATTTAT
TGTAGCTTTATTAGATCTCAACCTGTGGAAGTAATCTAATACAAACGACACTTGTATGGAATTT
TCAGGACATGTTTCTAAGATCACAGAGGTAATTGTGAAGTTTTCTGCTACACTCATTTACTAGT
CCACATGATCCATAGATGCAATTTAACCATCTTCACTCTATTTGGTGACCCATTCATGTGTTTA
GCATCGTGGGTTTTCCTGTACTAATAACCATTAGTACTTGGAGTTGCCTTGTTGGTGTTATGCT
CATAATGTTTACTATGTGGAAGCTACAGGATACGATACTCTCTAGGTTTGAGGACTAGCTCCAG
TTACGCTTTTGGGTCCAGTGAATGTATGATACCCATTATGTGGTCCAAAAAGAATGAGATTTGA
CGGACGCTCTAGTGGCCAAATTCATATGGCTACCTTCACTCTATGCCTTAAGAGCTGAAAAGTG
AGTGTTTTTTTTTTGTATAAAATGCTGGTCCTAGGATACACTTTTCGCATCTCTTCCTCTTTCA
TATTTGCTTACACCGCACTTCTCTTTCCCATTTTGAACTTTAAACTTTGAAAAGTTTTTTTTTG
CTTGGTAATTGGAACTTAACATACAAGTTCTTGTTATTTACTGGTTTTACGATGAATGTAATGG
CATTTAGAATTGTTATGAAATGGTTATATGATCATTGAATTCTAAAGAAAAGATTCTAGGTTCT
TTAGTAAGCATTTTTGGAGATCTTTATCCTGCCAAGTTGGATAAGTTGAGGCATCTTTGGCTTT
TAGTGCTTTGGTGATGAAATTTTTTGGAGATTGTAACGTGGTTCGAGTTCATGAAGAGTAAATT
GTGTATTGGCCTTTTCACTTGTAGCTCAAGAAAAAAGTAGTTTTGCTTATTATTGCTCGTTGAC
AGTCTCTAATTAAGTTTATTGTTGTAGCGGTTTGGAACTTCTCTCACATGTGTAGGCCTTCGGA
TAACTGTTACGAGTAATAGATCATATGTAACAATATCCTCAAAGTTGCATCGAGATTTTCAAGA
AAACACTATTGCTTATTTGTTTTCATTCTTTATCAGGTTTCCGTGGTTTCGAATACTTTGCTTC
TTTCAGATTAACGAAAACCCTATTTAGTTGCAAAGACTGAGAAGAGAATAAGAGTCGAGGGACC
ATATAAAGCTTGTAATTGTACGTTTATGCGGATTCTCCACTTTCCATGGCTGTGAGAAACTATC
TGAGGAAAAGTGCAGTGACCTTTGGCAAAAGGTAATCACTTTTATGCACTTTCACGTGCTAGCT
CGAATCCACACCAAATAGTAACATTCTATTGGCTCTGAAACTCATAGTGCTCCAAGTGGTTGTC
ATTGCATTTTAAAAATTCCTGACAAGAAATTTAGTAGAAACTTTGCTACTTCAAGTTTCCTTCT
TTATGATATGCTAGCTCGTATTATATGCAACATGGGATATCTTTGTTTTGCTTGTGTGGCTTAT
AAGTTTATGTTGCATGATCAAAACAGATCACTGAATAAATTTTCTGGTGGTCTGAGAACTCGCT
GCAGTGAATGAATGAGATCCATGTAAGTGGCCCCAAAAGAACATAATTTACAACACTCTGGTAG
GTAAATTCATGTGGATACTAAAACTGACTCATTTATGGCTAAAAAGTATTGATTTGGTACATGA
ATTCATCAGCTTAACCGTTGAAGTGGGAAGCTATCCTAGTGGTAAATAAGTTGATCTCTGGCCC
TTTCCAGGTGGCAAAAAGTGAAGGCTTTACAGTGTCACCCTTTTTCTTTTGGTTGCGTCGTTAT
TCTTTAGTGCCAGTATATACCTTGGAAAAAGTGAGCTATTATTCTAAAAGATAGACCAAGAAAT
AGATTTCTCACACTGAATATCTTTGTTCATTTGGATGGTCCATAGGCATTGACATATTCTGCTA
GTAGTGGTTGTGAGTGATAGAATCTTGTTATCCGAGACAACCTCGTGGGAATGGATTTAGCACC
AATGCTAATCACTAATCAGTACAAGAATATGCGTTGATGTAATTGTACCTATTAGCATTGTTCA
CTCAGGATTCTTGGTTATTTGTTACCTGACTATTCAGTGTGTGATTTTATTGGAGTTTTACATG
TTTACACTTGTCTCTGTAATCTACTTTTGGTATAAAATCATATTGAGTACAACTTTCTTTTCTC
AGGGATGTGCGAAATTGTCTTTGGGGCGGCATAAGTGGAATCATTTATCTTCTACGTGATAAAG
TGATGTGGAAAGTGTCACCAAGAAAGGAATCATTAACTTTGAACTTAGGCAAG
						
					

			
		

Sequences
Splice junction sequence	TCTTTGGGGCGGCATAAGTGGAATCATTTATCTTCTACGTGATAAAGTGATGTGGAAAGTGTCA CCAAGAAAGGAATCATTAACTTTGAACTTAGGCAAGgtatctctccgagtaaggcttcgagtgt cagagccatcaccaactgttatgggttgactacctatacaaaggttagacaaactcgtgaatat ggtatagt
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GTATCTCTCCGAGTAAGGCTTCGAGTGTCAGAGCCATCACCAACTGTTATGGGTTGACTACCTA TACAAAGGTTAGACAAACTCGTGAATATGGTATAGTTGTTGTTCCATTATTTGTGAATGCATCT GCATCATTTAGAAAGATTTGCAATTGAAACTTTCGAAGGATTTTCTGATGAAAAGTGTTATAAT GTTTAATCTGGTTCATAAAGTCATGGTAATGAGAATCATATCGGAAAAGTGACATGAAAAACAT AGAGACGGTGGATTTTCTAGGATCAAACTCGAATCCGCCAAGTAGTCTTGAGACTACAAATTAG AATTTACCTGACGCACAAGTTAAAACTTAAAAGGCATTTTGGAGTCCACATGAGCAATAATTAG ATTTATCATATATAGTATGTAGAAATTTGCACTTGGTAACCATTATAGTAAGTAGTTACAAAAC ATGACTCATGAGTGTTGTCACATCTCTGTAATTTGGGTTTATGATGATACTCTATACTATTTAT TGTAGCTTTATTAGATCTCAACCTGTGGAAGTAATCTAATACAAACGACACTTGTATGGAATTT TCAGGACATGTTTCTAAGATCACAGAGGTAATTGTGAAGTTTTCTGCTACACTCATTTACTAGT CCACATGATCCATAGATGCAATTTAACCATCTTCACTCTATTTGGTGACCCATTCATGTGTTTA GCATCGTGGGTTTTCCTGTACTAATAACCATTAGTACTTGGAGTTGCCTTGTTGGTGTTATGCT CATAATGTTTACTATGTGGAAGCTACAGGATACGATACTCTCTAGGTTTGAGGACTAGCTCCAG TTACGCTTTTGGGTCCAGTGAATGTATGATACCCATTATGTGGTCCAAAAAGAATGAGATTTGA CGGACGCTCTAGTGGCCAAATTCATATGGCTACCTTCACTCTATGCCTTAAGAGCTGAAAAGTG AGTGTTTTTTTTTTGTATAAAATGCTGGTCCTAGGATACACTTTTCGCATCTCTTCCTCTTTCA TATTTGCTTACACCGCACTTCTCTTTCCCATTTTGAACTTTAAACTTTGAAAAGTTTTTTTTTG CTTGGTAATTGGAACTTAACATACAAGTTCTTGTTATTTACTGGTTTTACGATGAATGTAATGG CATTTAGAATTGTTATGAAATGGTTATATGATCATTGAATTCTAAAGAAAAGATTCTAGGTTCT TTAGTAAGCATTTTTGGAGATCTTTATCCTGCCAAGTTGGATAAGTTGAGGCATCTTTGGCTTT TAGTGCTTTGGTGATGAAATTTTTTGGAGATTGTAACGTGGTTCGAGTTCATGAAGAGTAAATT GTGTATTGGCCTTTTCACTTGTAGCTCAAGAAAAAAGTAGTTTTGCTTATTATTGCTCGTTGAC AGTCTCTAATTAAGTTTATTGTTGTAGCGGTTTGGAACTTCTCTCACATGTGTAGGCCTTCGGA TAACTGTTACGAGTAATAGATCATATGTAACAATATCCTCAAAGTTGCATCGAGATTTTCAAGA AAACACTATTGCTTATTTGTTTTCATTCTTTATCAGGTTTCCGTGGTTTCGAATACTTTGCTTC TTTCAGATTAACGAAAACCCTATTTAGTTGCAAAGACTGAGAAGAGAATAAGAGTCGAGGGACC ATATAAAGCTTGTAATTGTACGTTTATGCGGATTCTCCACTTTCCATGGCTGTGAGAAACTATC TGAGGAAAAGTGCAGTGACCTTTGGCAAAAGGTAATCACTTTTATGCACTTTCACGTGCTAGCT CGAATCCACACCAAATAGTAACATTCTATTGGCTCTGAAACTCATAGTGCTCCAAGTGGTTGTC ATTGCATTTTAAAAATTCCTGACAAGAAATTTAGTAGAAACTTTGCTACTTCAAGTTTCCTTCT TTATGATATGCTAGCTCGTATTATATGCAACATGGGATATCTTTGTTTTGCTTGTGTGGCTTAT AAGTTTATGTTGCATGATCAAAACAGATCACTGAATAAATTTTCTGGTGGTCTGAGAACTCGCT GCAGTGAATGAATGAGATCCATGTAAGTGGCCCCAAAAGAACATAATTTACAACACTCTGGTAG GTAAATTCATGTGGATACTAAAACTGACTCATTTATGGCTAAAAAGTATTGATTTGGTACATGA ATTCATCAGCTTAACCGTTGAAGTGGGAAGCTATCCTAGTGGTAAATAAGTTGATCTCTGGCCC TTTCCAGGTGGCAAAAAGTGAAGGCTTTACAGTGTCACCCTTTTTCTTTTGGTTGCGTCGTTAT TCTTTAGTGCCAGTATATACCTTGGAAAAAGTGAGCTATTATTCTAAAAGATAGACCAAGAAAT AGATTTCTCACACTGAATATCTTTGTTCATTTGGATGGTCCATAGGCATTGACATATTCTGCTA GTAGTGGTTGTGAGTGATAGAATCTTGTTATCCGAGACAACCTCGTGGGAATGGATTTAGCACC AATGCTAATCACTAATCAGTACAAGAATATGCGTTGATGTAATTGTACCTATTAGCATTGTTCA CTCAGGATTCTTGGTTATTTGTTACCTGACTATTCAGTGTGTGATTTTATTGGAGTTTTACATG TTTACACTTGTCTCTGTAATCTACTTTTGGTATAAAATCATATTGAGTACAACTTTCTTTTCTC AGGGATGTGCGAAATTGTCTTTGGGGCGGCATAAGTGGAATCATTTATCTTCTACGTGATAAAG TGATGTGGAAAGTGTCACCAAGAAAGGAATCATTAACTTTGAACTTAGGCAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.099943714

Conservation Information
Conserved circRNAs	NA
PMCS	0.099943714

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						response to drought stress

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	response to drought stress

			
						 Other Information
					
						References
						Zhang et al., 2019

circRNA

Detail information of AT5G15845_circ_g.4

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