Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G09300_circ_g.2 |
ID in PlantcircBase | ath_circ_001630 |
Alias | At_ciR4428 |
Organism | Arabidpsis thaliana |
Position | chr1: 3005775-3007360 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | AT1G09300 |
Parent gene annotation |
Intermediate cleaving peptidase 55, mitochondrial |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | 3 |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G09300.1:6 AT1G09300.2:6 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.114670365 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
3005790-3007357(+) |
Potential amino acid sequence |
MLHSKGFPDEGILSAQVEYECRVRGAQRMAFNPVVGGGSNASVIHYSRNDQRIKDGDLVLMDMG CELHGYVSDLTRTWPPCGKFSSVQEELYDLILQTNKECIKQCKPGTTIRQLNTYSTELLCDGLM KMGILKSRRLYHQLNPTSIGHYLGMDVHDSSAVGYDRPLQPGFGLLKTMLHSKGFPDEGILSAQ VEYECRVRGAQRMAFNPVVGGGSNASVIHYSRNDQRIKDGDLVLMDMGCELHGYVSDLTRTWPP CGKFSSVQEELYDLILQTNKECIKQCKPGTTIRQLNTYSTELLCDGLMKMGILKSRRLYHQLNP TSIGHYLGMDVHDSSAVGYDRPLQPGFGLLKTMLHSKGFPDEGILSAQVEYECRVRGAQRMAFN PVVGGGSNASVIHYSRNDQRIKDGDLVLMDMGCELHGYVSDLTRTWPPCGKFSSVQEELYDLIL QTNKECIKQCKPGTTIRQLNTYSTELLCDGLMKMGILKSRRLYHQLNPTSIGHYLGMDVHDSSA VGYDRPLQPGFGLLKTMLHSKGFPDEGILSAQVEYECRVRGAQRMAFNPVVGGGSNASVIHYSR NDQRIKDGDLVLMDMGCELHGYVSDLTRTWPPCGKFSSVQEELYDLILQTNKECIKQCKPGTTI RQLNTYSTELLCDGLMKMGILKSRRLYHQLNPTSIGHYLGMDVHDSSAVGYDRPLQPGF(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015 |