Detail information of BGIOSGA007311_circ_g.2


General Information
CircRNA Name BGIOSGA007311_circ_g.2
ID in PlantcircBase osi_circ_011517
Alias Chr02:126712_131369(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr2: 101922-106599  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA007311
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA007311_circ_g.1 BGIOSGA007311_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA007311-TA:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATGCCTTGACTTGCTGTTAGCATTTGTTGCAGCTGTGGTACGCTTCAGCATCCCAGAAAAAAG
TAAGGCCTCAGCATCCGCAAAATTTTCAACGGATACcagatttgtttagagcagagtcaataga
tacaagatcagtttgacttgatagagaaacaaaactttgagccacttgaccagaagacacatca
ttgttttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGATTTGTTTAGAGCAGAGTCAATAGATACAAGATCAGTTTGACTTGATAGAGAAACAAAACT
TTGAGCCACTTGACCAGAAGACACATCATTGTTTTGCTCAACAAAGGTATCTTCAACAGCTGGA
AATTTCTTGCATGAACAACTTAGAACCTTCAACTTCTTCTCCAGCTCCATAATTTTGATGTCTT
TAGATCTAAGCAATTCTCTTGTGCTCTCAACAGCATTCTCAGACTCCTACAGGCAAACATGTGA
ATTAAAAAAGGACAAAAAAATCTATGGTGAATTTATTGATCTATATATCCCATACAATATAAAC
CTACTAAGTGAAATTATGGCATTTCTACTTTTCTCACAAAAGCACATCATCATAATTTTCTAGC
ATTTTGATAATTGATCTAGGGTAGTAGGGTGTAGATTGTACCACAAAGCCAAGCCGTCTAGCTA
TAATTCAAATCCACCTCGGACCTCATGTTAACCATTTTGTCACGCTAATTTCACATGGCGACAC
ACAAGGTTTATATCTAGTTTCATTAACAACTAAAAACAGTGAAATTTCAAGAGCACTAGATATA
CAACAATAAATCCCACTTCAAGCATGTTATGTTCCTTACTTGACTTCACTACCCATCCTTAGAA
CTTACCACATTGAAGACAGACATCAATATTCCACATTCTGGTCAATTAAACAGAGATAAGCAAT
ATAAAGGCAGGAAATTACCAAAAGTTTTTGTTTATACTGCTTTAAAACAGTCCATAAAGCCCTG
GCAAAGTTTGTCATTATTTCTTCATTTCTCGAAACTCTTCGCAATTCTGAATTAAGAAGCTTGT
ACTGTGACTCATCTGCGCAAATATATGAAATAAACAGTATGAGGTGAATGTTGTTATTCTCTTA
CTTTATTACACTGAAGATAAGAGAAATATTTATTACGAGTTATGCAAAGCAAAGGGTCAGAACT
ATGACTACAGACAAGTAAGAGTCAATAATAGTACTGACTACTGAGACCGAAAATGAACTGTGCC
AAAAAAAAACATGTGATATTGAAACAAATGAAATATTAATATAGGTGAATAGAACCTTTTTCAG
AAATTGTAACACCATCATCCTTATCAATGTCATCCTTTCCTGCGACCTGCATAAATATAGCATA
GATTATAGTGCCTTCTGAGTTCTGACTAAGATATGAAATAACTATAGCAGACATAATTATATAA
GAACTTGTTTGAGGGAAATATGGATCAGAACATGATGAAGTTTGAGTGATGTGAGGGCAGTCAA
GACTCAAGACTATGTGGTCCTTTAGTACTTATGGTACAGGATTGTAATTAAACACTAAAAATTG
GGTCAATGATAAATCAGGACTTCAAGGTTTTAAATTGATCAGCTTGTTTGAAGCACTATGGAGA
ATTAATAAGTTAGATGGGCCAAAATGAACAAGTGGAAAGCTTAGTAAAAATTACATCCATACTG
CAAAAACTTCAACCTTATGAATCTTCCTCTTTTTCGTGTTCTCTTGGCAAATCAGGGAAGCACT
GCTTCTCTTTTGGGAAACCAATCCAGAAGAGTCCTCAAGGTTGGTATACCTGAAAGATAGCAAA
ATAAAACCAGGGCCCCTTTGAAACACAGGATAGGAATAACACAGGAATAGGAAAAACGCAAGAA
TTGAAGTTGCATGTTTCTCCAATCCTACAGGAATGGAAAACACAGGAAAGATGAAGATGGAGCC
CTTTGATAGCATCACAGGAAACTAACAAAGCAAAGGAAAGTTTCCAAGAGGTTGGACCTCTTGC
TTATTTTCCTATGAAATTGAACCATAGGAATGCAATCCTATGGAAAATGTCCTATCCTTTCCTA
CGAATCAAAGGGCTCCATAGGAAAAATTCCTTAGGAAATTGAAACCTGGCAATATTTTCTGATG
TTGGATATCAAATAGAAAATAAATAATGAATACCTTCAAAAGAACATGTATAAATGAAGTACTT
GCTACTGAGATTTTGTTTTAGTACAAACACATTATTGAAAAGATGTGGATTAAATTAGTCATAT
ATCGCTTCCCTCAATGCATTTCCTCCATTCTAGGGTTACGTCCCATGATCTAAAGTTGTCCCAT
GATCTAAAGTTCCCAATAGCTGATATCTTAAAATATGACCCTTTCAACTAGAAATGCTCACCCT
AACAGTATTGGAAAACAAACAGAGGAAACACCACCAAGAAGCTTTGTGTAATTTATTAGGCAAT
TTTTACATGCACCATATAATTTCAGTATTTCACTTGCAATTCCTTTTGCATTTTCCAGCATTCA
TACCATAGGTCATATGTAGAGCAAATGTAAAATTGTTTCCTACTTCCCTAAAGTCAAGATTATG
TATGTATTCAAGTTTATCTCCCTTCATGTGTCTAATTCCTCAAAATAATGAGTAACTGCTGTTA
TGACCAACATAACAAATAGAGAAATAGGCTTAGAGCGGTTTTTTAAAAAGAATCAACTGCACTA
GAATCCTATCTGGTTAAATAAGATGCAGCTTACAAAATATTTTTTACTCTCATAAGACAATTCT
GTCAATGATTGTAAGGGGAGTACTTTATTTTCATGTACGGAGATGCTTGTCTTAGCAAAAAAGA
TGTATCCAAATAATCATCATCTCCTGGTTTCACATTCAAAATCTGAAAAATAAGAAAAATCACG
ATTAAAAAAAAAACTCAACACATAGACCACACAGCAAAAGTGATAAATAAATAACATAGCAGGC
TGCAAATGTCATTGCAGCACATAAATGAGCATAGGCACTGTTATGGATGCAGCCAACCATCCTT
ACATTAGGAGGCACTACGAATAATCACAAATAAGTGCTCGCTTCAATTTGGATCTATCTTATTA
TGTTATCTTTTGAGTGATGAACTTGTTCCTTCAAAGATAGTACTTCCTCTACACAAAAATAAGT
GGTGTTCTAGGATCAAACTTTTGTACTTTCACTAACCATACCCCCAACCACCACCACCACAAAA
AAAAGGAGGGTAAACTCGAATTTTTTAGATGTCAGTAAACCAACATTTCCTTGATTTGATAAAT
ATATCGCTACAAAATTTGGGATCAAAGAGCTTTGGGAACTGTGTCAGGTCCAATGCATTGCTTA
ATTTGTGACGGATAAAGTATAAAGCACATCAAAACATTTTTTAAAAAATGTAGCCTATAAGTGA
AGGTGAAGCGCATCATTTCAGGAGATTTCAATAAGAATGGACAATTATTTTAGGTGCAAATAAC
ATACCAGAGTCATTTTCTTCCTTCCTTCCAGGTAGTCTCTCAAGTACCTTGTCAACTATCAAAA
ATCAAAATTACAAAAGATTTAGAAGAAATAAAAATAAAATTCCGTTTCAAATTAATCTTCAATT
GCTACAACTGGTGAATCATAAAATGTTGTTTGAACTTTAAACTTATTGCATAAAAAAGTTTTGA
GAGCAGAAAAATAAGTCATCAGGAATAGAATGTGAAAATTAGTTTTTGCATTTCATCAACAAAC
TAGCTCACTATACATGGAACCAATGTCATTAGTTATATAACAAAATATAGAAAATCAATTGATG
TGAGACCACCGAAAAAAGTGCTAAGCAAGATTTATCAATTGTAAATTGCCTTGTTGACCTTTAG
ATCTGTTCTTCAGATTCCTCACTACAAATAGAGGATCTATGTAAAACATCATTTGATGACCATA
ATTAGGGAAAGAAATGGTGATTACACACCAAAGGGCAAAAAAGGATAGAAAGAGGCAAGATTCA
AATCCATGTTTTGCTTGTCTCAAAAGAATATGTTGTGTCAGCAGACATACCATTGAGTTCTTGA
AGTGCTTCTCCAAGGGTTTCTTCTTGTTTTTCTGATGCTCTAACAAAGACTGCAGTTCCAAAAG
ATATTTAAAAAAGCATGCATTAGCAAGCATGACTTACTGATCTGAGTATGCAAAACATAACTTA
GTATTTCTGCAACCACCTCCAGATGGAAAAAGGAGCTACTAAAGAAAATCCATTTGGCCATACC
CTCAAACAGAGACCAAAAACCATGGATGTATTGTTGATGAAATTACTCTCTAGCAATCGTGTAC
CCTGTAAATGAAAGAGTAAGAGAAATGTACACAAAAGATGGCATCCCATAAAAGAAAAGGTGTT
GTGCATGCTTCATATGTTCTATCTACTAATCTATATTATTGGGGGAGGGACCATTGATCAAGAA
ACAAACTTGATTTCCAGTTCTCCTTTCCCGCTCTGCCCCCGCAAGGTCTGCTATGGTCAGGACA
GCATTATTAAGCGAATTCTCACTTTCTGCATCAGAGCTTTTATGAACAGCACGTATAGTGATAA
TGCACTGCGATCGACTGCAAGACAACATAAGCGTAAATTAGTAGATCAAAAATTAGAACAAATG
CTCAAAATAGAAAGCAAAGAACTATATGGTAGAAAGAAAAAGGAAAGAAAACACAGCATCTCTA
CCATCATTAGGAAAAGAAAACCTTGAAAGTAAAATAGATATATCCAGGATAAAGTTTTTTGGTT
AGTGAAGATCATATGAAGAAATTTATAAGGAAAACATGCCTTGACTTGCTGTTAGCATTTGTTG
CAGCTGTGGTACGCTTCAGCATCCCAGAAAAAAGTAAGGCCTCAGCATCCGCAAAATTTTCAAC
GGATAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021