Detail information of BGIOSGA033076_circ_g.1


General Information
CircRNA Name BGIOSGA033076_circ_g.1
ID in PlantcircBase osi_circ_008463
Alias Chr10:18456367_18457438(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 15342409-15343480  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA033076
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA033076-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTTTCATATATTGATGTTTAGGTTGAGTCCCACAGGAAGGCTGCGGCTGCAGCTGCTTCTGGT
AAATTCAAGGAAGAAATTGTTCCAGTTCACACGAAGgtgcctataggacagcaatttgcaagtc
caagagaggtggtttcaaggatactcccgcagaggacctcttggttccagtattcaaggtttgt
atttgtta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGCCTATAGGACAGCAATTTGCAAGTCCAAGAGAGGTGGTTTCAAGGATACTCCCGCAGAGGA
CCTCTTGGTTCCAGTATTCAAGGTTTGTATTTGTTATCATATACTCATTTTCTCCCAACTTGAC
AATTAGTGAACTGGTTGCTTCTGTCTCGACCTTTGGTCTCATTCTCATATATTTTGCCTCCCAA
CTACAGGCTTTGATAGATAAAACGAAGTTGAACCCAAGTGAAGTTGGTGATATTGTTGTTGGTA
CTGTTTTAGCTCCTGGGTCCCAAAGGGCAATTGAATGCAGAATGGCTGCATTTTATGCTGGATT
CCCTGGTAAGAGTCATAATAAACATTATCATGTTTGCCATTAATATTAGACTGTCATCATTCTC
AACTTGATTAATTTGTTTTGTATGCTCCAGATACCGTTCCTCTTATGACTGTAAACAGGCAATG
TTCGTCTGGGCTTCAAGCAGTTGCAAATGTTGCTTCTAACATTAAAGCAGGACTTTATGACATT
GGTATGATCCGCTGGTGGTTAATCTTAAGAAGTCCTTTTTGTGAGGAGAAGTTTGAAAAAAAAA
TTCATGGTGAACTGACTTTTGTTATTTATTCAAGGTATTGCTGCTGGCCTAGAGTCCATGACAG
TGAACCAAGTTCGCCTTGATGGGCAAGTGAACCCCAAAGTATGTGAAACATGATGGTCAATGCA
GCAAGATAATCTTTGGATGCACGTGTAAAGATATTTGAGCTTGATTTTTTTTTGGCTGAAATCT
CCCGCTATTTTAGGTTGAGCTGTTTTCTCAAGCACGCGATTGCCTTCTCCCAATGGGCCTCACG
TCCGAGAATGTTGCAAAACGATTTGGCATAACACGAATGGAGCAAGACCAGGCTGCTGTAGGTT
GCCTTATCAATTCTTTCTTTGGACATGTGTATTGATACACAGTGAAGTGTTGCACAATATGATT
CTTTCCCTTATTATTTTCATATATTGATGTTTAGGTTGAGTCCCACAGGAAGGCTGCGGCTGCA
GCTGCTTCTGGTAAATTCAAGGAAGAAATTGTTCCAGTTCACACGAAG
Conservation Information
Conserved circRNAs osa_circ_006993
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021