Plant Circular RNA Database

Detail information of Os02g0135300_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os02g0135300_circ_g.1
					
						ID in PlantcircBase
						osa_circ_013030
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 1861536-1863817  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os02g0135300						
					
						Parent gene annotation
						
							Similar to Wee1-like protein kinase. (Os02t0135300-00)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							NA						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0135300-00:7

General Information
CircRNA Name	Os02g0135300_circ_g.1
ID in PlantcircBase	osa_circ_013030
Alias	NA
Organism	Oryza sativa
Position	chr2: 1861536-1863817 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os02g0135300
Parent gene annotation	Similar to Wee1-like protein kinase. (Os02t0135300-00)
Parent gene strand	-
Alternative splicing	NA
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0135300-00:7

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AGGGAGCATATCAAACTAGTATAAGTGAAGTCTCACCTCTCTTGTATCTCTTGCTCCTACAGAC
TGATTTCTCTGGAGAATTGGGGCAAGGGATATTCTCctttattaaactctgaaattgcattggg
catcctggaagcaacgcaatttttccctcccggagacttgtgaactgaggtccagaatcaggaa
gctgggta

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTTTATTAAACTCTGAAATTGCATTGGGCATCCTGGAAGCAACGCAATTTTTCCCTCCCGGAGA
CTTGTGAACTGAGGTCCAGAATCAGGAAGCTGGGTACCTCTTATAAGTTCATAGATAGCTGCCC
CAAGAGAAAAGATATCCACCTTGTCAAGATGCTCATACTTGTCGTTCAGCATCTCTGGAGGCAT
ATAACGTGAATCTCCATCTTCAATTGCCAAACTCCGATCAATAAGTGTAGCACAACCAAAATCA
CCAAGCTTATAAACACCATTTCTGACATATATGTTATCTGGCTTCACATCAAGGTGTGCAATAC
CACGTTCATGAATGAAGTCCAAGCCTTTGCAGATCTTCATTTTCACAAAATTAAGTTTAATATT
AATAGGTGAGATACACATGGAATGTATGGAGAATTTGGAATGCAAACAACACATGATTACAAAA
GCTGGTCTATAATGAGCTTCAGAGAAAGACAAACACTACCAGCACAAAGTATATGCCCTTTCCC
ACTTCTACAAGAATTCTCTCCAACACTAAAACTTGTGCAGGTAAATAGTATTTGTGAACTGCCT
CACGCAATTAGAATACACCCTATATTGTGGCTATCTGTATACCATAGTACCATACCTCCATTAT
GGAGATTAGGCTTCAGTATTTGTTTGAACTGGATGACGCCCATCAACATCAAGTTGAAATATGT
TACACTCACCAAGTTAAAATAGAAGATCTAAGACCTGTTTGTTTACTCTAGCATGATGATAAGT
GTTCCATTTTACTTTCCAACTGCATGTGTTGTATACCGTGTTTGTAAGAACTAAGAACCCAAAA
ACTTGCATGTTTTACTCCCAAAGACCAGAACATGCACCTTACAAACATCATGGTCAAATAAGAG
CAATCAATTGCTAATGTAAGTGGATAACAGCAGAGAATAAACATTATCCATGAATAATTTGAGC
CTTCAGAAAGTATTTAATATATGTTGCAGAAACTTGTTTGGATGAATTACGACATAATATTGTT
ATTATATCATAACTGCAACATAACTTAGCTACGCGTACTGATCCAATGACAAAGAAGAAACAAA
ATGAACCAGTAAACAATAAGAGTAACTATTGCGTACCTGGTACAGCAGTTCCAGGGCTTCCCCA
CATTTCAGCGGCTGATTTCTATCCATGGACAGGCAGCGGTCACACAGTTCCATTTGAATAAAAA
GCTGTTTGTTCTCAAACCAAGAAGTGAAATATCCAACAATGTTCTCATGGCACCCTGCTAAGAC
ATGTAACAGATGTTATAACCATGTAAGAAATATAGCTGAAAATGAGGAGGTTATAGTTAATTTT
GCTACCTAAGGCTGCCAAAGCTTGAACTTCCTTCACTGCTTGCCTCCTGCAATGAGAGAGACAA
CATACAAGTATGCAACATTAGTTTTTCATGGTTAATAATTAAGCATAACGACTGCTGCAAGGCT
ACCTTTCCCTGTCATTATGCAGTTGCCTGATACTCCGTTTTACTGCATATAAGCAGCCATCTAT
CCTCTTCAGAACTTTGAACACAACACTGAAGTTTCCACGTCCAATTTGCTGAAAATCAAGTGTG
CTCATAAGCAAAACCAACATAAAATGGAAGTGTATAACCTGACACAGATAACCAATACATATCC
AAACTTCCAAAGCAAACCTCAATCTCATGGAAATCAGTTCGATAGCGTGAAAGGCCATCACCAT
CAACAGAAGGAGAAAACCCTGCATATAAAAAATGTGTATTGGGAGATGTAAGGCTACACGGTAC
TGACAAACAGATAAATGATAGTTTTGAGGGGATGTATCGAGATGATTATGATACAATAGCATAC
AATGCATCAAAATGCTACCTGATGATTTGCATTGTCTCCCACCAAAAACATTATCATCTATTTG
ATGATCTGTATTGAGGTATGGATTCCTGATGCATGGTGGAGGCATCACCCGGCAGCGAAGAGCC
ACTGCCGATTGGGAGACATAACTACCTCTCTTGTGCGAACTAGATTCCTTCAGCTGTTCCTCCT
CTGAATCATCTAGACCTTCAAACTGAACTGGAGCAATCCACTGGCTATCAAAAATGTCATTGGA
GCCAAGGCCTTTGGGGGAACAATCTGTAAGCATTGGCACACATCCAATTATACAGAGAATAAAT
AAACAAAGGGAGCATATCAAACTAGTATAAGTGAAGTCTCACCTCTCTTGTATCTCTTGCTCCT
ACAGACTGATTTCTCTGGAGAATTGGGGCAAGGGATATTCTC
						
					

			
		

Sequences
Splice junction sequence	AGGGAGCATATCAAACTAGTATAAGTGAAGTCTCACCTCTCTTGTATCTCTTGCTCCTACAGAC TGATTTCTCTGGAGAATTGGGGCAAGGGATATTCTCctttattaaactctgaaattgcattggg catcctggaagcaacgcaatttttccctcccggagacttgtgaactgaggtccagaatcaggaa gctgggta
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTTTATTAAACTCTGAAATTGCATTGGGCATCCTGGAAGCAACGCAATTTTTCCCTCCCGGAGA CTTGTGAACTGAGGTCCAGAATCAGGAAGCTGGGTACCTCTTATAAGTTCATAGATAGCTGCCC CAAGAGAAAAGATATCCACCTTGTCAAGATGCTCATACTTGTCGTTCAGCATCTCTGGAGGCAT ATAACGTGAATCTCCATCTTCAATTGCCAAACTCCGATCAATAAGTGTAGCACAACCAAAATCA CCAAGCTTATAAACACCATTTCTGACATATATGTTATCTGGCTTCACATCAAGGTGTGCAATAC CACGTTCATGAATGAAGTCCAAGCCTTTGCAGATCTTCATTTTCACAAAATTAAGTTTAATATT AATAGGTGAGATACACATGGAATGTATGGAGAATTTGGAATGCAAACAACACATGATTACAAAA GCTGGTCTATAATGAGCTTCAGAGAAAGACAAACACTACCAGCACAAAGTATATGCCCTTTCCC ACTTCTACAAGAATTCTCTCCAACACTAAAACTTGTGCAGGTAAATAGTATTTGTGAACTGCCT CACGCAATTAGAATACACCCTATATTGTGGCTATCTGTATACCATAGTACCATACCTCCATTAT GGAGATTAGGCTTCAGTATTTGTTTGAACTGGATGACGCCCATCAACATCAAGTTGAAATATGT TACACTCACCAAGTTAAAATAGAAGATCTAAGACCTGTTTGTTTACTCTAGCATGATGATAAGT GTTCCATTTTACTTTCCAACTGCATGTGTTGTATACCGTGTTTGTAAGAACTAAGAACCCAAAA ACTTGCATGTTTTACTCCCAAAGACCAGAACATGCACCTTACAAACATCATGGTCAAATAAGAG CAATCAATTGCTAATGTAAGTGGATAACAGCAGAGAATAAACATTATCCATGAATAATTTGAGC CTTCAGAAAGTATTTAATATATGTTGCAGAAACTTGTTTGGATGAATTACGACATAATATTGTT ATTATATCATAACTGCAACATAACTTAGCTACGCGTACTGATCCAATGACAAAGAAGAAACAAA ATGAACCAGTAAACAATAAGAGTAACTATTGCGTACCTGGTACAGCAGTTCCAGGGCTTCCCCA CATTTCAGCGGCTGATTTCTATCCATGGACAGGCAGCGGTCACACAGTTCCATTTGAATAAAAA GCTGTTTGTTCTCAAACCAAGAAGTGAAATATCCAACAATGTTCTCATGGCACCCTGCTAAGAC ATGTAACAGATGTTATAACCATGTAAGAAATATAGCTGAAAATGAGGAGGTTATAGTTAATTTT GCTACCTAAGGCTGCCAAAGCTTGAACTTCCTTCACTGCTTGCCTCCTGCAATGAGAGAGACAA CATACAAGTATGCAACATTAGTTTTTCATGGTTAATAATTAAGCATAACGACTGCTGCAAGGCT ACCTTTCCCTGTCATTATGCAGTTGCCTGATACTCCGTTTTACTGCATATAAGCAGCCATCTAT CCTCTTCAGAACTTTGAACACAACACTGAAGTTTCCACGTCCAATTTGCTGAAAATCAAGTGTG CTCATAAGCAAAACCAACATAAAATGGAAGTGTATAACCTGACACAGATAACCAATACATATCC AAACTTCCAAAGCAAACCTCAATCTCATGGAAATCAGTTCGATAGCGTGAAAGGCCATCACCAT CAACAGAAGGAGAAAACCCTGCATATAAAAAATGTGTATTGGGAGATGTAAGGCTACACGGTAC TGACAAACAGATAAATGATAGTTTTGAGGGGATGTATCGAGATGATTATGATACAATAGCATAC AATGCATCAAAATGCTACCTGATGATTTGCATTGTCTCCCACCAAAAACATTATCATCTATTTG ATGATCTGTATTGAGGTATGGATTCCTGATGCATGGTGGAGGCATCACCCGGCAGCGAAGAGCC ACTGCCGATTGGGAGACATAACTACCTCTCTTGTGCGAACTAGATTCCTTCAGCTGTTCCTCCT CTGAATCATCTAGACCTTCAAACTGAACTGGAGCAATCCACTGGCTATCAAAAATGTCATTGGA GCCAAGGCCTTTGGGGGAACAATCTGTAAGCATTGGCACACATCCAATTATACAGAGAATAAAT AAACAAAGGGAGCATATCAAACTAGTATAAGTGAAGTCTCACCTCTCTTGTATCTCTTGCTCCT ACAGACTGATTTCTCTGGAGAATTGGGGCAAGGGATATTCTC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.156931971

Conservation Information
Conserved circRNAs	NA
PMCS	0.156931971

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							1863638-1861548(+)
1863502-1861538(-)
1861568-1863776(-)
						
					

						Potential amino acid sequence
						
							MSLEPRPLGEQSLLYLLLLQTDFSGELGQGIFSFIKL*(+)
MPPPCIRNPYLNTDHQIDDNVFGGRQCKSSGFSPSVDGDGLSRYRTDFHEIEQIGRGNFSVVFK
VLKRIDGCLYAVKRSIRQLHNDRERRQAVKEVQALAALGCHENIVGYFTSWFENKQLFIQMELC
DRCLSMDRNQPLKCGEALELLYQICKGLDFIHERGIAHLDVKPDNIYVRNGVYKLGDFGCATLI
DRSLAIEDGDSRYMPPEMLNDKYEHLDKVDIFSLGAAIYELIRGTQLPDSGPQFTSLREGKIAL
LPGCPMQFQSLIKENIPCPNSPEKSVCRSKRYKRDCSPKGLGSNDIFDSQWIAPVQFEGLDDSE
EEQLKESSSHKRGSYVSQSAVALRCRVMPPPCIRNPYLNTDHQIDDNVFGGRQCKSSGFSPSVD
GDGLSRYRTDFHEIEQIGRGNFSVVFKVLKRIDGCLYAVKRSIRQLHNDRERRQAVKEVQALAA
LGCHENIVGYFTSWFENKQLFIQMELCDRCLSMDRNQPLKCGEALELLYQICKGLDFIHERGIA
HLDVKPDNIYVRNGVYKLGDFGCATLIDRSLAIEDGDSRYMPPEMLNDKYEHLDKVDIFSLGAA
IYELIRGTQLPDSGPQFTSLREGKIALLPGCPMQFQSLIKENIPCPNSPEKSVCRSKRYKRDCS
PKGLGSNDIFDSQWIAPVQFEGLDDSEEEQLKESSSHKRGSYVSQSAVALRCRVMPPPCIRNPY
LNTDHQIDDNVFGGRQCKSSGFSPSVDGDGLSRYRTDFHEIEQIGRGNFSVVFKVLKRIDGCLY
AVKRSIRQLHNDRERRQAVKEVQALAALGCHENIVGYFTSWFENKQLFIQMELCDRCLSMDRNQ
PLKCGEALELLYQICKGLDFIHERGIAHLDVKPDNIYVRNGVYKLGDFGCATLIDRSLAIEDGD
SRYMPPEMLNDKYEHLDKVDIFSLGAAIYELIRGTQLPDSGPQFTSLREGKIALLPGCPMQFQS
LIKENIPCPNSPEKSVCRSKRYKRDCSPKGLGSNDIFDSQWIAPVQFEGLDDSEEEQLKESSSH
KRGSYVSQSAVALRCRVMPPPCIRNPYLNTDHQIDDNVFGGRQCKSSGFSPSVDGDGLSRYRTD
FHEIEQIGRGNFSVVFKVLKRIDGCLYAVKRSIRQLHNDRERRQAVKEVQALAALGCHENIVGY
FTSWFENKQLFIQMELCDRCLSMDRNQPLKCGEALELLYQICKGLDFIHERGIAHLDVKPDNIY
VRNGVYKLGDFGCATLIDRSLAIEDGDSRYMPPEMLNDKYEHLDKVDIFSLGAAIYELIRGTQL
PDSGPQFTSLREGKIALLPGCPMQFQSLIK(-)
MPNAISEFNKGEYPLPQFSREISL*(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	1863638-1861548(+) 1863502-1861538(-) 1861568-1863776(-)
Potential amino acid sequence	MSLEPRPLGEQSLLYLLLLQTDFSGELGQGIFSFIKL(+) MPPPCIRNPYLNTDHQIDDNVFGGRQCKSSGFSPSVDGDGLSRYRTDFHEIEQIGRGNFSVVFK VLKRIDGCLYAVKRSIRQLHNDRERRQAVKEVQALAALGCHENIVGYFTSWFENKQLFIQMELC DRCLSMDRNQPLKCGEALELLYQICKGLDFIHERGIAHLDVKPDNIYVRNGVYKLGDFGCATLI DRSLAIEDGDSRYMPPEMLNDKYEHLDKVDIFSLGAAIYELIRGTQLPDSGPQFTSLREGKIAL LPGCPMQFQSLIKENIPCPNSPEKSVCRSKRYKRDCSPKGLGSNDIFDSQWIAPVQFEGLDDSE EEQLKESSSHKRGSYVSQSAVALRCRVMPPPCIRNPYLNTDHQIDDNVFGGRQCKSSGFSPSVD GDGLSRYRTDFHEIEQIGRGNFSVVFKVLKRIDGCLYAVKRSIRQLHNDRERRQAVKEVQALAA LGCHENIVGYFTSWFENKQLFIQMELCDRCLSMDRNQPLKCGEALELLYQICKGLDFIHERGIA HLDVKPDNIYVRNGVYKLGDFGCATLIDRSLAIEDGDSRYMPPEMLNDKYEHLDKVDIFSLGAA IYELIRGTQLPDSGPQFTSLREGKIALLPGCPMQFQSLIKENIPCPNSPEKSVCRSKRYKRDCS PKGLGSNDIFDSQWIAPVQFEGLDDSEEEQLKESSSHKRGSYVSQSAVALRCRVMPPPCIRNPY LNTDHQIDDNVFGGRQCKSSGFSPSVDGDGLSRYRTDFHEIEQIGRGNFSVVFKVLKRIDGCLY AVKRSIRQLHNDRERRQAVKEVQALAALGCHENIVGYFTSWFENKQLFIQMELCDRCLSMDRNQ PLKCGEALELLYQICKGLDFIHERGIAHLDVKPDNIYVRNGVYKLGDFGCATLIDRSLAIEDGD SRYMPPEMLNDKYEHLDKVDIFSLGAAIYELIRGTQLPDSGPQFTSLREGKIALLPGCPMQFQS LIKENIPCPNSPEKSVCRSKRYKRDCSPKGLGSNDIFDSQWIAPVQFEGLDDSEEEQLKESSSH KRGSYVSQSAVALRCRVMPPPCIRNPYLNTDHQIDDNVFGGRQCKSSGFSPSVDGDGLSRYRTD FHEIEQIGRGNFSVVFKVLKRIDGCLYAVKRSIRQLHNDRERRQAVKEVQALAALGCHENIVGY FTSWFENKQLFIQMELCDRCLSMDRNQPLKCGEALELLYQICKGLDFIHERGIAHLDVKPDNIY VRNGVYKLGDFGCATLIDRSLAIEDGDSRYMPPEMLNDKYEHLDKVDIFSLGAAIYELIRGTQL PDSGPQFTSLREGKIALLPGCPMQFQSLIK(-) MPNAISEFNKGEYPLPQFSREISL(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os02g0135300_circ_g.1

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