Detail information of BGIOSGA015009_circ_ig.1


General Information
CircRNA Name BGIOSGA015009_circ_ig.1
ID in PlantcircBase osi_circ_014410
Alias Chr04:22790965_22791147(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 20452418-20452600  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-AA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTAAGCAATCGCAATTAATCGCAACACAAGCACCATCTCTGAAATATGGACCACATAGTGGCAG
TAACAAAGAAGAACACTACATCTCTCAgagcccagatcacatcgctacaataattgatatatcc
ctctgtttgtacattcatgagatccattgaacgagataatcttcagtactctccc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAGCCCAGATCACATCGCTACAATAATTGATATATCCCTCTGTTTGTACATTCATGAGATCCAT
TGAACGAGATAATCTTCAGTACTCTCCCGTAAGCAATCGCAATTAATCGCAACACAAGCACCAT
CTCTGAAATATGGACCACATAGTGGCAGTAACAAAGAAGAACACTACATCTCTCA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021