Detail information of Os11g0207200_circ_g.1


General Information
CircRNA Name Os11g0207200_circ_g.1
ID in PlantcircBase osa_circ_008805
Alias NA
Organism Oryza sativa
Position chr11: 5462512-5462761  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os11g0207200
Parent gene annotation Similar to MAP3Ka. (Os11t0207200-01)
Parent gene strand +
Alternative splicing NA
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   GT-TG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTCATAAACCACTGTTCTGAATTTGTTAAGAGGGAAACACTGTGGTATATATTGTATGAAAATC
TGATTTTAATTTGCTATTTTATATATTTTTGCCTGAgtaaatatagaactcatgatgattttat
gatcttgtcttgagcatgtagttgcatcataagttaaacgaagacatacaatcattcaatcatt
acgaactc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 250
Transcript exons: 5462512-5462761
GTAAATATAGAACTCATGATGATTTTATGATCTTGTCTTGAGCATGTAGTTGCATCATAAGTTA
AACGAAGACATACAATCATTCAATCATTACGAACTCTGAAATTAGGTGATGGCAACAGTTAGAT
TAATTGTTAGTATTATTTTCCAGTCATAAACCACTGTTCTGAATTTGTTAAGAGGGAAACACTG
TGGTATATATTGTATGAAAATCTGATTTTAATTTGCTATTTTATATATTTTTGCCTGA

Genomic sequence GTAAATATAGAACTCATGATGATTTTATGATCTTGTCTTGAGCATGTAGTTGCATCATAAGTTA
AACGAAGACATACAATCATTCAATCATTACGAACTCTGAAATTAGGTGATGGCAACAGTTAGAT
TAATTGTTAGTATTATTTTCCAGTCATAAACCACTGTTCTGAATTTGTTAAGAGGGAAACACTG
TGGTATATATTGTATGAAAATCTGATTTTAATTTGCTATTTTATATATTTTTGCCTGA
Conservation Information
Conserved circRNAs osi_circ_009371
PMCS 0.2420426
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017