Detail information of Zm00001d043275_circ_g.1


General Information
CircRNA Name Zm00001d043275_circ_g.1
ID in PlantcircBase zma_circ_007772
Alias zma_circ_0001282
Organism Zea mays
Position chr3: 194098356-194098909  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ
Parent gene Zm00001d043275
Parent gene annotation Vacuole membrane protein KMS1
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d043275_T001:1
Zm00001d043275_T006:1
Zm00001d043275_T010:2
Zm00001d043275_T005:2
Zm00001d043275_T014:1
Zm00001d043275_T004:2
Zm00001d043275_T009:2
Zm00001d043275_T011:2
Zm00001d043275_T008:1
Zm00001d043275_T003:2
Zm00001d043275_T002:2
Zm00001d043275_T012:2
Zm00001d043275_T013:2
Zm00001d043275_T007:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGCTTGGTTCGATTAAGGGATGATGCTACTGGCCCATCTTCTTTGGAAGTAGCTGCATCAAGCT
CCTGAACAGCTTTTGACTCGCTTCCTGATAAGCGAGctgaatatgagtcttgatgatggctttc
ccaatcaaagtagcaaacaagaactcccagaaaggcacaccaaattgcccacacataataccag
caaggtca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGAATATGAGTCTTGATGATGGCTTTCCCAATCAAAGTAGCAAACAAGAACTCCCAGAAAGGC
ACACCAAATTGCCCACACATAATACCAGCAAGGTCAAAGAGTGGATTTGGAACCTAATAAGAGC
ATTAAAATTAGGCAATTATTTTTAAAAATAGAATAAAAATCCTTTAGAGAAACTTATGGCAACT
GATGTATAGGGAATGTTCCATACGCTTATTTGTTGGTGTCATTTTATCTAGACAGCTTTTAAAT
GTGGAGCTAAAGCTTGCACATGATCCAAAGGTGCAAAAAAGATCAATTGTGAAGACACAAAGCC
AAATATCATAAATTACAGGTGTAAAATATCCACACTGAAGAACTTGGTAACAGAGGATGGAAGA
CAGGAGACCAACCGAAGCAAGAATCAAGATAGAGAAGAAGTTGAGATGTTGGGAGTGAGAGAGA
AGCCAACGCTTGGTTCGATTAAGGGATGATGCTACTGGCCCATCTTCTTTGGAAGTAGCTGCAT
CAAGCTCCTGAACAGCTTTTGACTCGCTTCCTGATAAGCGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.095534507
Functional Information
Coding potential Y
Potential coding position 194098441-194098837(-)
Potential amino acid sequence MCGQFGVPFWEFLFATLIGKAIIKTHIQLAYQEASQKLFRSLMQLLPKKMGQ*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b