Detail information of Os03g0764450_circ_g.1


General Information
CircRNA Name Os03g0764450_circ_g.1
ID in PlantcircBase osa_circ_022011
Alias Os03circ27364
Organism Oryza sativa
Position chr3: 31625644-31625758  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method SMALT, Segemehl
Parent gene Os03g0764450
Parent gene annotation Similar to SWIB/MDM2 domain containing protein. (Os03t0764450-00
)
Parent gene strand +
Alternative splicing Os03g0764450_circ_g.2 Os03g0764450_circ_g.3
Support reads 2
Tissues leaf
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0764450-00:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGCATTTCCCCAACGCTTCAAGAGTTTGTTGGTGCCTCTGAGTTAGCTAGGACAGAGatcagat
ggagccaatactgatggcaagagaaaaggtggtggcttcaccaaattatgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATCAGATGGAGCCAATACTGATGGCAAGAGAAAAGGTGGTGGCTTCACCAAATTATGTAGCATT
TCCCCAACGCTTCAAGAGTTTGTTGGTGCCTCTGAGTTAGCTAGGACAGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.145736667
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015