Detail information of Os01g0613900_circ_g.2


General Information
CircRNA Name Os01g0613900_circ_g.2
ID in PlantcircBase osa_circ_002602
Alias Os_ciR5906
Organism Oryza sativa
Position chr1: 24354331-24358807  JBrowse»
Reference genome IRGSP-1.0.38
Type   ui-circRNA
Identification method find_circ
Parent gene Os01g0613900
Parent gene annotation Hypothetical conserved gene. (Os01t0613900-01);Similar to predic
ted protein. (Os01t0613900-02);LPPG:FO 2-phospho-L-lactate trans
ferase CofD/UPF0052 domain containing protein. (Os01t0613900-03)
Parent gene strand -
Alternative splicing Os01g0613900_circ_g.1 Os01g0613900_circ_g.3 Os01g0613900_circ_g.4 Os01g0613900_circ_g.5 Os01g0613900_circ_g.6 Os01g0613900_circ_g.7
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os01t0613900-03:10
Os01t0613900-02:9
Os01t0613900-01:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAGACTAAAAAGGCACGTATTGTTTCTCTGTATGGCTGTGAGACACCATCCCACAAAGCGTGCT
CTCCTTCTACAATCTGGTACCTGTCAAGTACACAACctaacatttgagaactgagatttcagca
tacagactctacattttctgttagaagatcaggttccacgaaacgcctatccgatattagactg
gtcagggc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTAACATTTGAGAACTGAGATTTCAGCATACAGACTCTACATTTTCTGTTAGAAGATCAGGTTC
CACGAAACGCCTATCCGATATTAGACTGGTCAGGGCTTGAATCAATGAATGCGGATCAAAAATA
ATGCCCGTCTTTCCATCGTGTATAGAGTCCACAGTAACCTGCAATATACTTCATAAGTTAGCAC
ATTAAAACGACAATCTCAATACTGTTTATGCACAAGCTACAATACAGAAGAACGTGGACCAGTA
TCGCGTACTTCTGGAATACCGACCTACACATTGAGTTTTCATATTTATCTTGTGTAAATAACAG
TGTGCCTTTTTTCTAACATGTAATGGATAAATGCCTAAGTATGCAAAAGTAAGCTTGTTTAACC
AAGGCTACAGAGCTCAATGTGACCCACCGTGCAAAATCTGCAATTATTGTAGTTTTATCATGTA
CTCCCTCCGTTTCAGGTTATAAGACGTTTTGACTTTAGTCGAAGTCAAACTACTTCAAGTTTAA
CTAAGTTTATAGACAAAATTAGTAATATTTATAGTACCAAATTAGTTTTATTAAATCAATAATT
GAATATATTTTCATAACAAATTTGTCTTGGGTTGAAAATATTTTTATTTTTTTCTACAAATTTA
GTTAAACTTGAAACAGTACTTTGACCAAAGTCAAAACGTCTTATAACCTGAAACGGAGGTAGTA
GTAATTAATAAGCTGATGCTAGATATCCTCTTTCATTGGGGATGAAATGACGGAAGTAACATGG
TATCGCACACAGAAAAGCCAACTAGGAAAGAAGCGTTAAAATTTCGGAGCATCTCGACCATTCA
TTTTCTTTTTCGTGATTGTTTCTCAGTAAAAGACCTAGAATCTAAGTATTCATGTAACCTTTGG
CTGTATATATCCATTCATGGATATAGAGGCTGGATTTTCTATCCATTCTCGAAAATATTACACA
GTTAAGGACTCGATGGATAACTATAACATTTTTCCACACATTTTACACTTAATGATCACTGTTT
TAGCAAACACAAACACTTACCACATGAAAGATTCCTTTAGAAGACAAGTTTTTTATATCCAAAG
GAATTTGGCCTCCTTTTGGTACCAATAAAGCATTCACATAGTCTTTGGGCTGCACAAAATGAAA
AAGAAGCTGTCAGATGGAAAATCTTCACACAGATAATGTTAAGGGGCAGGGGCATATGTACATC
TTTAACTGAATCATTCAAGATGTGGACCAGGGGACGCTGATCTGTGGGATATTCCCATCCTCTA
AAGCTAGTAAATGATATGATGCATAATTCCTCCAATCATTAGCTGAAAATCTGTTCAAAGGCAC
AGTCACCGAACTTACAAGATTCTTTAGACTTTTGTCAGGATATCCATATGTACGGTTTAGAGAA
TCAGTAATGGCAGTCACAAAGCCAGAAGCAGGCAACCCAGTTGTTTCTCTGTCATGCGACCCAT
TCAAAAGAAGTACCTAGATTCAGAATAAATAATTTTAGACAAAAGCACCAATAGCCACAAGCAT
GATCAACCAAGGGGCTAAAAACCAAGAAAAACAACATTTTATGTGAAGAAAAACTCCCTTCACA
CATCAAATAACCCCATGAGTCCACTACTATGGAGGTGAATCCACTATTCTAGGTTGCTATTAAA
CCCATTCTAGCATAATGAAATCAAGAGCATGAAGCAAGTCAATATGGTTTAACAAGAATGTCAG
GTCTTAGTAATGCTTTTATTTACATGATGGAATCAAGAAAAAATGAATCAACACAAATACAGAA
CATTGTATTAAAGCATATGAAAACAAGACAATATTTTTTTAACATGACTACCTTCGGAATGGAT
CTTGATGCTATAGTTTCACCAATGCCACGCAATACCTGCACAGCCTTAAATTTCAGAAGAAGAC
AAGCTGATGTGGAAAACAGGCACAGGTAAAAAAGCTTAAAGTCAGTATCAGTAATCAGATGTGC
ACGGCACCCATGTTTGCTTAGTACTGCATGTAGTATAAAAATGAACATATCTGATATCATGTTA
AGACTTAAGACCATCAAGTCAATACAATTATGTACAAACAAAAAATAGAGCAGCATGGTTACCA
ATGATGGACAGACTGATGTAAAGAGTGATCCCATAGCATATACAATGCAGTCCACCTTACTTAA
CTGCTCCAAAACTGTACGGTTAGCTTCAGGAAATACCTGCATTGCAAGGTTAGTAGGAACAGTT
AGGAGTTTTAAAACATAAAAAAGGGTTGTTTACATATATACTGTTGTGAAGTGGCTAATTTGAT
ACATGTCATCCCAATATGCTTACATGGTTATAAGTGCACACCCTTTTAAGCCCATGATATTCAC
AAAACATAACAGCCTACTATATGAAGGAGTTGTCCCTTCTCATGCCTACTAAGCTTAGAAGGAG
TAAGCGTACTCTTTAAAGAATTAAGTTAACCAAGAGCTAAAAACCCACTATTGATGAATGGTAT
AGTTCACAATGTTGTAAGTAACACCATGAGACTGATTAGATAAGCATGATAAATGGAAATATAG
ACTACATTTTCTGATTATTATATCATGATCATTATTAAGAACATGAAGATGTGTGGTATTCAAG
AAAAAAATTTTACGCTGAGAAATTAAAGTAGAAAGGCTGAATCAATTCTTAGAGGGACTAGTAG
CTTTTGTTTTAACAAAAATCAAAGTCTTACCCAACCAAGAATTCATGATAGATGTGCAATGAAA
GGTTCAGTCTAGGTGGTTACGATAAAATGAATGTACTAACCTCATGCAACAGGTTGCTGCCTTC
ACTTGACATGTAAAAGACACGCTTAATCCTTGAAGGAAGTGCACTACATGAATTACAATCCTTT
TCCAAAAATAAAAAGCAAAATAAAAAATAAATCAGTGACAGATAAACAAATATTATAAGAAATC
AACAAGCATGCCCAGGTAAAAAGGAGAAAAACATAGATTCAAGATAACATGTGAATCAATGACA
ACCATGCCATGAACAAAAACGGAAATGAAGCAAAAATAGCCGATATTGTCATAACGAAATGGAG
TTTGCACAATTGTAAATATCAGTCCACCAGAGAAGGATATGGCAACACAATTTTAAAGGTAGGA
GTAACATTTTTTTTTCTTCTATAGCTTCTTTTATAAGATAAAACATAAAAAAGTTGTTCCATAG
AACATATTGAAGTGGCCCCAGAAATGCTTTGGAGCCTTCATCGCAATGATGTTACATAGATCAT
ATTAACTACTATTGGGAGTATGCTGAAATGATTTATAGACTGGAGTACCTTGTTAACAACTTCT
TTACGTCCATTGCTTGGATGTGATATTTCATTTTGACCTCGGATGATAGTTCCATCCTGAAAAT
GGAATAATGTCCAAGATGATTATATGTGATTTTGTAGTAAGGGAATGTTTGTAATAATAGGAGT
AACATTGTAAAACAAAGACAATCATGCCAGTTTTCAGAAGCAAGTTGGAATAATTAAAGAAAGT
TTATAAGGGGGGCTAATTAAACTATCAGTGAAATAACAAAATAAATAAATAAATAAATGGAAGC
AATAAAATTAACCAACATAAGAACAAGAAGACCAGATCACCAGAGCAGTCCGAAAAATGAATCT
ACTGGTTTTTTTATTGTGCAACTAAAATACTGATAAGTGATGTTACCCATAGTTCGCATCCCAG
TGTAAGCCTGTCATTTGTGGATATCACTGGAAGAACAAGACTTTCAGCAGGGATCTGTGACACA
CGTGAGAACAAGAAAATCGCAGCATCCAGAGACTGGAAGAATATGCGTGCCCCAGCAAAAAAGA
AATTCCCAATGCTGCAAGAATAAAAAGCTGTAGTCAATAACAGATGTAGGCAAGATGGGAGTAT
TGTTATTATGAGTTGTGACCACAAAAAATGCCCCAATACCAAGAAATAAGTATTGCCACAAAGG
ACATCCCTGTCACGCCATCGAATTGAGAAGTGGCAAGAGACCAACGGGTGACATGTTAAAAGCA
ATCACAAGAATATGATTTACTGCAAATTTCACCTTAAAAGAATCACCTGCCATTGGTGAAGCAA
AACATTTCAGCTGACCGTCGAAGTATCTGCACAAACGAAACGACTGCAATTATATGTCATGGGC
AAGGAACGACTGCTTGATCATCAGACTGCCCTCTATACCAGGAAAATAAATCTTGGCAAAAAAG
AAAACAGAAGGGGGGGAGGCGAAAAATCATATTCTCTTCTGTTCTCCAGTCAGAAAACTGTTCA
TTTGAAATTTTCAAAGCAAAATCTTTAAGCAAATTAAAAATATGCTATGAAAAGAAAATACTAC
AGAGGAACTGACCTCATTATGGAAGTAGACTAAAAAGGCACGTATTGTTTCTCTGTATGGCTGT
GAGACACCATCCCACAAAGCGTGCTCTCCTTCTACAATCTGGTACCTGTCAAGTACACAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.310725982
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015