Detail information of Os06g0217500_circ_g.1


General Information
CircRNA Name Os06g0217500_circ_g.1
ID in PlantcircBase osa_circ_030198
Alias NA
Organism Oryza sativa
Position chr6: 5980039-5980213  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os06g0217500
Parent gene annotation MED6 mediator family protein. (Os06t0217500-01)
Parent gene strand -
Alternative splicing Os06g0217500_circ_g.2
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os06t0217500-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCGGGGCTCTCCCGCCTCTGCTTCCGGATCACGAACAGGTGCGGCTCCATCACGTCGCTGAGCA
CGTACTCCATCCCCGTCATCTTCgatgcgggacgcgaagacgctgcagagctggggcgcctggt
agatggagccatcgaggatgtagtaggcgagcatggcgttggacttc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 175
Transcript exons: 5980039-5980213
GATGCGGGACGCGAAGACGCTGCAGAGCTGGGGCGCCTGGTAGATGGAGCCATCGAGGATGTAG
TAGGCGAGCATGGCGTTGGACTTCTCGGGGCTCTCCCGCCTCTGCTTCCGGATCACGAACAGGT
GCGGCTCCATCACGTCGCTGAGCACGTACTCCATCCCCGTCATCTTC

Genomic sequence GATGCGGGACGCGAAGACGCTGCAGAGCTGGGGCGCCTGGTAGATGGAGCCATCGAGGATGTAG
TAGGCGAGCATGGCGTTGGACTTCTCGGGGCTCTCCCGCCTCTGCTTCCGGATCACGAACAGGT
GCGGCTCCATCACGTCGCTGAGCACGTACTCCATCCCCGTCATCTTC
Conservation Information
Conserved circRNAs NA
PMCS 0.312862476
Functional Information
Coding potential Y
Potential coding position 5980113-5980184(+)
5980211-5980208(-)
5980093-5980208(-)
Potential amino acid sequence MALDFSGLSRLCFRITNRCGSITSLSTYSIPVIFDAGREDAAELGRLVDGAIEDVVGEHGVGLL
GALPPLLPDHEQVRLHHVAEHVLHPRHLRCGTRRRCRAGAPGRWSHRGCSRRAWRWTSRGSPAS
ASGSRTGAAPSRR*(+)
MTGMEYVLSDVMEPHLFVIRKQRRESPEKSNAMLAYYILDGSIYQAPQLCSVFASRIEDDGDGV
RAQRRDGAAPVRDPEAEAGEPREVQRHARLLHPRWLHLPGAPALQRLRVPHRR*(-)
MAPSTRRPSSAASSRPASKMTGMEYVLSDVMEPHLFVIRKQRRESPEKSNAMLAYYILDGSIYQ
APQLCSVFASRIEDDGDGVRAQRRDGAAPVRDPEAEAGEPREVQRHARLLHPRWLHLPGAPALQ
RLRVPHRR*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017