Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os06g0217500_circ_g.1 |
ID in PlantcircBase | osa_circ_030198 |
Alias | NA |
Organism | Oryza sativa |
Position | chr6: 5980039-5980213 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os06g0217500 |
Parent gene annotation |
MED6 mediator family protein. (Os06t0217500-01) |
Parent gene strand | - |
Alternative splicing | Os06g0217500_circ_g.2 |
Support reads | 2 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os06t0217500-01:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.312862476 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
5980113-5980184(+) 5980211-5980208(-) 5980093-5980208(-) |
Potential amino acid sequence |
MALDFSGLSRLCFRITNRCGSITSLSTYSIPVIFDAGREDAAELGRLVDGAIEDVVGEHGVGLL GALPPLLPDHEQVRLHHVAEHVLHPRHLRCGTRRRCRAGAPGRWSHRGCSRRAWRWTSRGSPAS ASGSRTGAAPSRR*(+) MTGMEYVLSDVMEPHLFVIRKQRRESPEKSNAMLAYYILDGSIYQAPQLCSVFASRIEDDGDGV RAQRRDGAAPVRDPEAEAGEPREVQRHARLLHPRWLHLPGAPALQRLRVPHRR*(-) MAPSTRRPSSAASSRPASKMTGMEYVLSDVMEPHLFVIRKQRRESPEKSNAMLAYYILDGSIYQ APQLCSVFASRIEDDGDGVRAQRRDGAAPVRDPEAEAGEPREVQRHARLLHPRWLHLPGAPALQ RLRVPHRR*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |