Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d045967_circ_g.1 |
ID in PlantcircBase | zma_circ_009932 |
Alias | zma_circ_0003215 |
Organism | Zea mays |
Position | chr9: 50649661-50655155 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d045967 |
Parent gene annotation |
Protein kinase superfamily protein |
Parent gene strand | + |
Alternative splicing | Zm00001d045967_circ_g.2 Zm00001d045967_circ_igg.1 Zm00001d045967_circ_igg.2 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d045967_T001:11 Zm00001d045967_T010:12 Zm00001d045967_T008:11 Zm00001d045967_T006:12 Zm00001d045967_T003:12 Zm00001d045967_T007:11 Zm00001d045967_T005:11 Zm00001d045967_T002:11 Zm00001d045967_T004:11 Zm00001d045967_T009:12 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.111215097 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
50650023-50649664(+) 50649682-50655109(-) |
Potential amino acid sequence |
MEHVLSSRRFPTDPNEYKLYEEIGDGVSATVYRALCVPLDILVAIKVLDLEKCNNDLDGIRREV QTMSLIDHPNLLRAYCSFTNGHQLWVVMPYMAAGSALHIMKTSFPEGFDEPVIATLLREVLKAL VYLHSQGHIHRDVKAGNILIDTNGAVKLGDFGVSACIADIWSFGITALELAHGHAPFSKYPPMK VLLMTLQNAPPGLDYERDKRFSKSFKDLVATCLVKDPRKRPSSEKLLKHSFFKHARSAEYLARS ILDGLPPLGERFRELKSKEAELLLNNKLGQESKEQLSQMQLFAFQKEYIRGISGWNFNLEDLKN AAALIDSSNGTCYLDVRENRVKDDSQEAYNGPEHIYQERLNHVASRRPEEDEIQEVEALNDAVS SSFSSRSLEALKSCFDVCGVDDPSPTATDSRAQPSVGTLPFQQLQKFEHCKSGDCNGESLERSV SVPTNLVTSGYHKHSSGSLIPEQVLSPYLSSDLESL*(+) MWQNIISFPNHCSSREKELAQV*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |