Detail information of Zm00001d043387_circ_g.2


General Information
CircRNA Name Zm00001d043387_circ_g.2
ID in PlantcircBase zma_circ_007793
Alias zma_circ_0001301, GRMZM2G015881_C1
Organism Zea mays
Position chr3: 198390902-198391145  JBrowse»
Reference genome AGPv4.38
Type   ei-circRNA
Identification method find_circ, CIRI2
Parent gene Zm00001d043387
Parent gene annotation Transcription regulator
Parent gene strand -
Alternative splicing Zm00001d043387_circ_g.1
Support reads NA
Tissues leaf, root
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered Zm00001d043387_T002:1
Zm00001d043387_T001:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAAAATTGTAAATTGGAATACCATTATGTATCACCAAACAGACAAAACTGAATGTTCCGTATTG
GTGCCAAATTGTCTTTAACGGCTGAAATATCTGTCCctgggatcttcggtattgatgcattgat
tgggggttgtactccagtaataaattcaacttttgggctccttttcttctcctgttccttcctc
tcaacttc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 244
Transcript exons: 198390902-198391145
CTGGGATCTTCGGTATTGATGCATTGATTGGGGGTTGTACTCCAGTAATAAATTCAACTTTTGG
GCTCCTTTTCTTCTCCTGTTCCTTCCTCTCAACTTCACGCTTCATTTCAGCTTCTGCACTCAAA
TAGAACAGATAAGATGTAAAATTGTAAATTGGAATACCATTATGTATCACCAAACAGACAAAAC
TGAATGTTCCGTATTGGTGCCAAATTGTCTTTAACGGCTGAAATATCTGTCC

Genomic sequence CTGGGATCTTCGGTATTGATGCATTGATTGGGGGTTGTACTCCAGTAATAAATTCAACTTTTGG
GCTCCTTTTCTTCTCCTGTTCCTTCCTCTCAACTTCACGCTTCATTTCAGCTTCTGCACTCAAA
TAGAACAGATAAGATGTAAAATTGTAAATTGGAATACCATTATGTATCACCAAACAGACAAAAC
TGAATGTTCCGTATTGGTGCCAAATTGTCTTTAACGGCTGAAATATCTGTCC
Conservation Information
Conserved circRNAs NA
PMCS 0.261952051
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b;Zhang et al., 2019