Detail information of Zm00001d038587_circ_g.2


General Information
CircRNA Name Zm00001d038587_circ_g.2
ID in PlantcircBase zma_circ_009144
Alias Zm06circ00096, zma_circ_0002298, ZmciR268
Organism Zea mays
Position chr6: 160557014-160559225  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRI2, find_circ
Parent gene Zm00001d038587
Parent gene annotation Protein FRIGIDA-ESSENTIAL 1
Parent gene strand -
Alternative splicing Zm00001d038587_circ_g.1 Zm00001d038587_circ_g.3
Support reads NA
Tissues leaf, endosperm, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d038587_T002:4
Zm00001d038587_T023:4
Zm00001d038587_T009:3
Zm00001d038587_T011:4
Zm00001d038587_T020:4
Zm00001d038587_T004:3
Zm00001d038587_T003:3
Zm00001d038587_T030:4
Zm00001d038587_T010:4
Zm00001d038587_T031:4
Zm00001d038587_T026:5
Zm00001d038587_T033:3
Zm00001d038587_T008:4
Zm00001d038587_T028:4
Zm00001d038587_T016:2
Zm00001d038587_T035:4
Zm00001d038587_T032:4
Zm00001d038587_T025:4
Zm00001d038587_T034:3
Zm00001d038587_T007:4
Zm00001d038587_T017:4
Zm00001d038587_T005:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGAGCACATGGTTAATGTTGTCAGCTTTGTTCAAATATTTATCAACATCACGAGATTGCATCA
TTGGTCTCTTCTCAGCAACAGTCACTCCACAAAAACcaatattaacttgttgggcctacaaatg
aaggttaaccagattggtaggacagaaggttcaagctgtcatcaccattaagctcaagctccca
tctcagag
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1898
Transcript exons: 160557014-160557163,160557237-160558621,160558706-160558
881,160559039-160559225
CAATATTAACTTGTTGGGCCTACAAATGAAGGTTAACCAGATTGGTAGGACAGAAGGTTCAAGC
TGTCATCACCATTAAGCTCAAGCTCCCATCTCAGAGCTGCTGTATTTGATGGTTGGATGACATG
TACTGTGCCTATCAACATATGCCTTCACAAGTTTTTCTATCTTTGGTCCACATGTGGCTATGTA
CTTCGTAATCAACTCTTCAGTAGTTGGTACTTGATTTGGCTCAATGGAGTCCACAACCTTCTCG
ACAGATTTTCTCACTACCAGTTTATGAGCATCTTTACTCAGATTACCTTTTTTCCATATTGGTT
TGACCAACTCCTTTATATGTTCTGCCAAATGAAAACGGAAATCCCTTGTTTTCTCATTGTAATC
AACTGCATCCTTTTTTCTGTCACAAGCTTTCACCTTGATAGTATCATCCAGGCTAGAGCTGCAT
CCTCTATCAGGAGCAATAAAGTAAGCAGGTTCATTTGATCCTTTGGCAGTTATATTCCTGGTCA
ATTTGTCATTGCAATTCAAGGATTTATCAGTAACTGCGTACTGATCTGTATGCTGACTTGTAAT
GTTGCAGGATATAGTGGAGGGCTTGAGATTATTTGTATTCCCAACTTTAGGAGGTTCAACATAG
TCAACAAATGGATCATATTGACTTTCTGAAGCTGTTGTGCTATCAGGAAAACTAAAAGAAGGTA
CAAAAGGCACTGATGTTTCCCAGACCTCATTCTTAATTGGAGAGTGGGGCCCAACTGGCGTCAT
AGAAGGTTCAGGTTTACTGCTCACAAGCAATGCGGGTCCAGAACTAGAAGTACCATAGCCCTTT
CCAACATCAAGGCATCTATGGAGATCAGCCTTCTCAATATCAGATGTGAACAGATGATGGGACT
GTATTCCCAGATGAGAAGTTGCTAGAAGAGATGGGCTACCGAAAGTATGTTCAGAGGTAGCAAA
GCAAGGATTTCTGGATCCTGTTAAGCTATGTGAGCTGTATGAAGCATGGCATGAGTGATGTTCT
TTCTGATGTATGTTAGGAATAGTATTTGTCACTCCACCATATGCTGACAGCTTCTCACTGAGCT
GGAGAGGATCAGATGAAATAGACAAGCCAAATGATTTATATGGATAATCTGAAAGGTAAGTTCT
TGAGACATGGGAATCACTAACACTGCTTTCCTTGTCTATGTCAAACTGAAAAATACCTCCATCT
AATCTTGGATAGGTACCTCCAGCATCCAAATAGTTTTCAGCAGCCACATCAATATGGTGTCCCA
TGAAACGTTTGTTGTTCTTCTCATGAACTAATGGATTCTGAGCCAATGAATGACCAATGCTGAC
GGGCATCCTTTGTGAAACCCCAGGAATGGGAGAGCTGTGTTTACCAGCAAGATGTACCGACATC
TGATTATCTTTGCCAAATGCATAAATAAGATTCCGACACATTTCATCTTTTGACAAACCCTCTG
AATCCTTGAACTGATGCACTTTCAAGTCAGATATATGTTGTACTTGAGAACCTCCTTCAGAACC
TCTATGATTTCCAGAACCAGCTGGTGCGAGCAGACCAGTCTTTGCAGAACCAAATCCCTCCCTT
TCATGAAGAGAGATGCAACTCTTTCCTTTCTTGCACCGACCTTGAGCATCAAAGGTACATATTT
CGATGGGCCTTCTGATTTTGTTGTTCATATTTTCTCCAGGGGATGAGCTCTGAGCATCAGAATC
TAGCCGAGTCCCCAAACCATGTGTACCATGCAGGCAGTGACCACCAATTTTAGAAATGTCGCCA
GAGTTCATGAGCACATGGTTAATGTTGTCAGCTTTGTTCAAATATTTATCAACATCACGAGATT
GCATCATTGGTCTCTTCTCAGCAACAGTCACTCCACAAAAAC

Genomic sequence CAATATTAACTTGTTGGGCCTACAAATGAAGGTTAACCAGATTGGTAGGACAGAAGGTTCAAGC
TGTCATCACCATTAAGCTCAAGCTCCCATCTCAGAGCTGCTGTATTTGATGGTTGGATGACATG
TACTGTGCCTATCAACATATGCCTGTGATTGAACAGACAGAAGTAAATAATGTGAGCTGATTGC
TTGCAATCGACTGGAAGTGCAAGATATTTACCTTCACAAGTTTTTCTATCTTTGGTCCACATGT
GGCTATGTACTTCGTAATCAACTCTTCAGTAGTTGGTACTTGATTTGGCTCAATGGAGTCCACA
ACCTTCTCGACAGATTTTCTCACTACCAGTTTATGAGCATCTTTACTCAGATTACCTTTTTTCC
ATATTGGTTTGACCAACTCCTTTATATGTTCTGCCAAATGAAAACGGAAATCCCTTGTTTTCTC
ATTGTAATCAACTGCATCCTTTTTTCTGTCACAAGCTTTCACCTTGATAGTATCATCCAGGCTA
GAGCTGCATCCTCTATCAGGAGCAATAAAGTAAGCAGGTTCATTTGATCCTTTGGCAGTTATAT
TCCTGGTCAATTTGTCATTGCAATTCAAGGATTTATCAGTAACTGCGTACTGATCTGTATGCTG
ACTTGTAATGTTGCAGGATATAGTGGAGGGCTTGAGATTATTTGTATTCCCAACTTTAGGAGGT
TCAACATAGTCAACAAATGGATCATATTGACTTTCTGAAGCTGTTGTGCTATCAGGAAAACTAA
AAGAAGGTACAAAAGGCACTGATGTTTCCCAGACCTCATTCTTAATTGGAGAGTGGGGCCCAAC
TGGCGTCATAGAAGGTTCAGGTTTACTGCTCACAAGCAATGCGGGTCCAGAACTAGAAGTACCA
TAGCCCTTTCCAACATCAAGGCATCTATGGAGATCAGCCTTCTCAATATCAGATGTGAACAGAT
GATGGGACTGTATTCCCAGATGAGAAGTTGCTAGAAGAGATGGGCTACCGAAAGTATGTTCAGA
GGTAGCAAAGCAAGGATTTCTGGATCCTGTTAAGCTATGTGAGCTGTATGAAGCATGGCATGAG
TGATGTTCTTTCTGATGTATGTTAGGAATAGTATTTGTCACTCCACCATATGCTGACAGCTTCT
CACTGAGCTGGAGAGGATCAGATGAAATAGACAAGCCAAATGATTTATATGGATAATCTGAAAG
GTAAGTTCTTGAGACATGGGAATCACTAACACTGCTTTCCTTGTCTATGTCAAACTGAAAAATA
CCTCCATCTAATCTTGGATAGGTACCTCCAGCATCCAAATAGTTTTCAGCAGCCACATCAATAT
GGTGTCCCATGAAACGTTTGTTGTTCTTCTCATGAACTAATGGATTCTGAGCCAATGAATGACC
AATGCTGACGGGCATCCTTTGTGAAACCCCAGGAATGGGAGAGCTGTGTTTACCAGCAAGATGT
ACCGACATCTGATTATCTTTGCCAAATGCATAAATAAGATTCCGACACATTTCATCTTTTGACA
AACCCTCTGAATCCTTGAACTGATGCACTTTCAAGTCAGATATATGTTGTACTTGAGAACCTCC
TTCAGAACCTATGCACAGCAGGGAGCAATAAGAAGTTGGCTCTGTTATAGCAAGTTGTTGCTCA
CAGATTGCCCTAGTTAGGAAGCTCATACCTCTATGATTTCCAGAACCAGCTGGTGCGAGCAGAC
CAGTCTTTGCAGAACCAAATCCCTCCCTTTCATGAAGAGAGATGCAACTCTTTCCTTTCTTGCA
CCGACCTTGAGCATCAAAGGTACATATTTCGATGGGCCTTCTGATTTTGTTGTTCATATTTTCT
CCAGGGGATGAGCTACTCGATATTTGTTATGAAACGAATAAGTTAATAGGTACAGATCTGGTCG
TTTTAAGTATGTATAACAGGAAAAAAACAAGGCCATTCAAAGAATACAATAGCCAGATATTTTG
CTCAACGGTTTCAAACTCCTATTAATTACAATAGAACATACCTCTGAGCATCAGAATCTAGCCG
AGTCCCCAAACCATGTGTACCATGCAGGCAGTGACCACCAATTTTAGAAATGTCGCCAGAGTTC
ATGAGCACATGGTTAATGTTGTCAGCTTTGTTCAAATATTTATCAACATCACGAGATTGCATCA
TTGGTCTCTTCTCAGCAACAGTCACTCCACAAAAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.14684493
Functional Information
Coding potential Y
Potential coding position 160559075-160557089(+)
160559112-160557039(+)
Potential amino acid sequence MCTMQAVTTNFRNVARVHEHMVNVVSFVQIFINITRLHHWSLLSNSHSTKTNINLLGLQMKVNQ
IGRTEGSSCHHH*(+)
MSPEFMSTWLMLSALFKYLSTSRDCIIGLFSATVTPQKPILTCWAYK*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to drought stress