Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d038587_circ_g.2 |
ID in PlantcircBase | zma_circ_009144 |
Alias | Zm06circ00096, zma_circ_0002298, ZmciR268 |
Organism | Zea mays |
Position | chr6: 160557014-160559225 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRI2, find_circ |
Parent gene | Zm00001d038587 |
Parent gene annotation |
Protein FRIGIDA-ESSENTIAL 1 |
Parent gene strand | - |
Alternative splicing | Zm00001d038587_circ_g.1 Zm00001d038587_circ_g.3 |
Support reads | NA |
Tissues | leaf, endosperm, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d038587_T002:4 Zm00001d038587_T023:4 Zm00001d038587_T009:3 Zm00001d038587_T011:4 Zm00001d038587_T020:4 Zm00001d038587_T004:3 Zm00001d038587_T003:3 Zm00001d038587_T030:4 Zm00001d038587_T010:4 Zm00001d038587_T031:4 Zm00001d038587_T026:5 Zm00001d038587_T033:3 Zm00001d038587_T008:4 Zm00001d038587_T028:4 Zm00001d038587_T016:2 Zm00001d038587_T035:4 Zm00001d038587_T032:4 Zm00001d038587_T025:4 Zm00001d038587_T034:3 Zm00001d038587_T007:4 Zm00001d038587_T017:4 Zm00001d038587_T005:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.14684493 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
160559075-160557089(+) 160559112-160557039(+) |
Potential amino acid sequence |
MCTMQAVTTNFRNVARVHEHMVNVVSFVQIFINITRLHHWSLLSNSHSTKTNINLLGLQMKVNQ IGRTEGSSCHHH*(+) MSPEFMSTWLMLSALFKYLSTSRDCIIGLFSATVTPQKPILTCWAYK*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Han et al., 2020; Ma et al., 2021b;Zhang et al., 2019 |