Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Zm00001d038587_circ_g.2 |
| ID in PlantcircBase | zma_circ_009144 |
| Alias | Zm06circ00096, zma_circ_0002298, ZmciR268 |
| Organism | Zea mays |
| Position | chr6: 160557014-160559225 JBrowse» |
| Reference genome | AGPv4.38 |
| Type | u-circRNA |
| Identification method | CIRI2, find_circ |
| Parent gene | Zm00001d038587 |
| Parent gene annotation |
Protein FRIGIDA-ESSENTIAL 1 |
| Parent gene strand | - |
| Alternative splicing | Zm00001d038587_circ_g.1 Zm00001d038587_circ_g.3 |
| Support reads | NA |
| Tissues | leaf, endosperm, root |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Zm00001d038587_T002:4 Zm00001d038587_T023:4 Zm00001d038587_T009:3 Zm00001d038587_T011:4 Zm00001d038587_T020:4 Zm00001d038587_T004:3 Zm00001d038587_T003:3 Zm00001d038587_T030:4 Zm00001d038587_T010:4 Zm00001d038587_T031:4 Zm00001d038587_T026:5 Zm00001d038587_T033:3 Zm00001d038587_T008:4 Zm00001d038587_T028:4 Zm00001d038587_T016:2 Zm00001d038587_T035:4 Zm00001d038587_T032:4 Zm00001d038587_T025:4 Zm00001d038587_T034:3 Zm00001d038587_T007:4 Zm00001d038587_T017:4 Zm00001d038587_T005:4 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.14684493 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
160559075-160557089(+) 160559112-160557039(+) |
| Potential amino acid sequence |
MCTMQAVTTNFRNVARVHEHMVNVVSFVQIFINITRLHHWSLLSNSHSTKTNINLLGLQMKVNQ IGRTEGSSCHHH*(+) MSPEFMSTWLMLSALFKYLSTSRDCIIGLFSATVTPQKPILTCWAYK*(+) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | responsive to drought stress |
| Other Information | |
|---|---|
| References | Han et al., 2020; Ma et al., 2021b;Zhang et al., 2019 |