Detail information of Os06g0133900_circ_g.4


General Information
CircRNA Name Os06g0133900_circ_g.4
ID in PlantcircBase osa_circ_029553
Alias Os_ciR895
Organism Oryza sativa
Position chr6: 1818693-1818812  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os06g0133900
Parent gene annotation 5-enolpyruvylshikimate-3-phosphate synthase (Os06t0133900-01)
Parent gene strand +
Alternative splicing Os06g0133900_circ_g.1 Os06g0133900_circ_g.2 Os06g0133900_circ_g.3 Os06g0133900_circ_g.5
Support reads 23
Tissues root
Exon boundary   Yes-No
Splicing signals   GT-AG
Number of exons covered Os06t0133900-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACCAGTGTAACCGTAACTGGTCCACCACGTGAGCCTTATGGGAAGAAACACCTGAAAGCTggtg
atgtcaaatttgctgaggtacttgagatgatgggagcaaaggttacatggactgac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTGATGTCAAATTTGCTGAGGTACTTGAGATGATGGGAGCAAAGGTTACATGGACTGACACCA
GTGTAACCGTAACTGGTCCACCACGTGAGCCTTATGGGAAGAAACACCTGAAAGCT
Conservation Information
Conserved circRNAs NA
PMCS 0.518611667
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015