Plant Circular RNA Database

Detail information of Os06g0487900_circ_g.5

			
						 General Information
					
						CircRNA Name
						Os06g0487900_circ_g.5
					
						ID in PlantcircBase
						osa_circ_030902
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr6: 16740421-16743924  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os06g0487900						
					
						Parent gene annotation
						
							SUMO (Small Ubiquitin-like Modifier) Protease, Salt tolerance (O
s06t0487900-01);Hypothetical conserved gene. (Os06t0487900-02)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os06g0487900_circ_g.2 Os06g0487900_circ_g.3 Os06g0487900_circ_g.4 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os06t0487900-01:4
Os06t0487900-02:4

General Information
CircRNA Name	Os06g0487900_circ_g.5
ID in PlantcircBase	osa_circ_030902
Alias	NA
Organism	Oryza sativa
Position	chr6: 16740421-16743924 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	CIRCexplorer
Parent gene	Os06g0487900
Parent gene annotation	SUMO (Small Ubiquitin-like Modifier) Protease, Salt tolerance (O s06t0487900-01);Hypothetical conserved gene. (Os06t0487900-02)
Parent gene strand	-
Alternative splicing	Os06g0487900_circ_g.2 Os06g0487900_circ_g.3 Os06g0487900_circ_g.4
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os06t0487900-01:4 Os06t0487900-02:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							ACAAAATACTGGGTTTATATAACAAAGATCAAAATAGTTACCTCTTCATCTATCCCAAAGGAGG
ACCGAAAATCTGATATGGTTACTGCTTGTTGTTTAAcatgcagaggatgttttttctgcagagt
ctgaaatgcaagtatctccatcgagtagaaccacctcttcaaccacctgaatagaaatatcaga
ataagctt

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CATGCAGAGGATGTTTTTTCTGCAGAGTCTGAAATGCAAGTATCTCCATCGAGTAGAACCACCT
CTTCAACCACCTGAATAGAAATATCAGAATAAGCTTTGTAAAAAGAGTAACCTAAAGCAAACTA
ACTAGCATAGATAGTTCTAGAAGCTGTGATGAGTACATCTATAATAACAGGTACTGTGCAGTTT
ATCAATAACCCAACAAGAGGCAAATTAATTTCACTTTCATTCTGTGGATCGTTGCAATTACTGT
ATGGGACAGGGAACTGAAAACTGATCATAAACTACCGAAGAATCAAAAGCTGCCCAGGTTTTTT
CTATTTTCCTGGTACAGTCCATAAAAAAACAACCCCCCACCCCCACATTCCCATATAAATCACA
ATGAAGGGATGAAATATGCATCAAAAATCAAAACTTCCCATCTATTAGTCATACTGGGTTCACA
AAATATGTTTTTAATGGGTATATCTGCCGACCTGAAGTTTCATTTTAAATTGTACAAAAGCATT
ATGTACTCATGTTACTAATACCAATATGCCATAAAATTTTGGATATTTTGATATGTAAGAAATT
TTCATGCCATCTTCAATGCAGACGGCTGAAGTGGGTATACCCCTTATCAGCAGTAGCAAATCGC
AATTCACATGTTCGATGCGTAGACAAATATACTCAATAGTTGTCTTATGTTCTAACCGTAGGGA
TGAAAACAAGATCAAAGGTGATCTTACCATATTATATCATTTTTACATATCAGGAGTTGGATAT
AAATATGAATTAGGATAGTTATAATTAGATCAGATAAGAATACAATTTATGAATATTTAACCAG
ATATTAGACAGTGTAAAGTTCAGAGACAAATAACATCACAAATGAAACATTCAGCACACCTTTT
ATATCTCTACTAACAGTATAGCTATGGAATTGGAATCCATCATGGTTTGGGTGTAACAATTGGT
GGAAAGATATTTATAAACTATAAAACATTAATGCCTTTATAAGCAGCAAAGTCAATATGTGCAA
GATTTAAAAACCCAGAAAATTTTGTTGTTTGTTAAGAAAAATAAGAGCAAAAAAACGTTCACAC
CACAGAACAAACTCAAAATGCCCCATATGCATGAACATGGGGGAGAATTAGAGATCCCATGCCA
CCACTCCTCAACTAAGAGACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATGAGTCGA
CATCGAGGTGCCAAACAACTCCGTCGATAAGAGCTCTTGGGAGTCATCAGCCTGTTATCCCCGG
CGTACCTTTGATCCGTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACT
TTCGTCTCTGTTCGACCACCCCTCCTGCCTTTTTGTTTACATAATCCCCCGAACCCCTTGTTGC
CACAAGGTTCAAAAAAAGGCTTTTAATAGTACAATCCTAGGACTCTATTGTTACCATAGAACCA
TGTTGTACAGGGTCCATCTTGATTCTAATTGGAGCAGAATCCTTATTCTAATCGTAGTTACTTA
GAAAATAACCGGTTTTCTATGTCTTTCCTTCTAAATGTCACATATTACAAATAAATTCCAATTT
TAGTAATGCATAGTTGCATACTAGAAATCAGCACCAATGTTATAACAAAAAAAGGTATCTAATC
AGTTTATATGGAAATAATATTAATAGATTCTCAAAAGGAATACATTTTGTAGTAACATATCTTA
TAGTTTTTACCAGCATATTACTACTGAAATTAGTACACAAAGCTGTAGATTAGAAACTATGGTA
ACATCTGAAATGGCATGTATTTGTGAAATGAAGGAATGCGAAAATGGTCAAAGTATAAAAAACT
CAATGAGCATGCATGAAAAATAACAATTCACTTGACACGAAGATAAAACACAGCGTGTACAATC
ATCTAATCAACAATTTATCATCAAGCTTGGTAATAACAGAATCAACCACACATCAGCAAACGGA
ACTTCACAAATTTATCACAATTCAGTTAAAAGGAGGAGCCTTTAGGGCAGTAAGGTTCATTCTT
TGATAGTGAGCGAGAAGATGATAATATCATTGCAAATAAATATTTCCTTTTTCCCAGTTAGAAA
ATATAATTAATCTTTCCATGTTATTGACCACCATAACAGATAGTCAAAAAACAAATCAACTAAT
TTATGTACTGGCAATAATAGGGGTGGTGGACCTCTGCCAACTGTATTACTAGAACTTTAGTATT
CAACATAAAAATTACTACTAGTATACCATGTCACGATGTTTGGAAAGGAAAATGTACATACTAA
CCTTTCTTGATCGCAATCGCATTGAAAAGGTAGGTGAAAATTCTCCATTCCTAGTAGAGGACAG
ATAACATAATTCAATACAATAACTAATAAGTTACAGATTAACAAAACATATTCATTGATCAATA
CATATATGCAGTTACAAGTTTAGAACTGGTGAGATATACAACAATCTAACAGTCTAACAGATGC
ACAAGACATGGTATATATAATAGCAGTATTGCTATTTGTTTGTCAACTGATTTGCTTTATCTAA
CAGTCACAATGCTTAGCCTAAATTTGCACCATATAAAAAGTACTACCACCGTTTTTTTAATATA
ATTTTGTGCAAATATAAAAAAACTGACGACATGCTTAAAGAACATTTGATGATAAATCAAGTCA
CATTAAAATAAATGATAATTACATATTTTTTTGAATAAGATAAATGGTCAAACGTATCTAAAAA
AAGTCAACGGCGTCATATATTAAAAAATGGAGGGAGTACAACTTTTATATAAATCATTGCAACT
GTAAGATTGCTTCTTTTTTTTCTATGTTTTGCATTGTCTTGGATGCGTTTGATTCAATTAAAAA
ATCAGTGTTTGATGGAAACCTACATCTCCATGCTTCATAATTCTAAATTGTAAAAAAATAAGTT
ATCTAAACGAATGTTTTGCATTTCCCTTGATGCTTTAATATCTATAAGGTATGAACACCAAGAA
TTTTGATAGGGTTATGCATCTCATGAAATGATGCATGATTTTAGAACAAGTTAACTGTTAACAT
TCCCATAACAAAGAAAATGGATGTTCGGCTTGAGACTCTGCAATACAAGAGTTTGTGTATACTA
ACCTTTTCCTAGAAGTGTGGGCATCTTTGCATATCCTACTGTAGCCATTATCCTTGCCATCATC
AGCAGCATCTATATTTTCCATATAAGTTGACCTATCAACATATGATGCCTTTTGAGACGTAGAG
GGTTTACACTTACAGGAATCTTCCTCTTCACACAAGATCCCCTCATTATCTGTTGAAGTTTTTG
GGTCGCCAATGCATGCACTTGTTTCCAAATGAGATACATCAACGCCTGCCTAATGTAAAGGAAA
TAAAACACTTGCACAAAATACTGGGTTTATATAACAAAGATCAAAATAGTTACCTCTTCATCTA
TCCCAAAGGAGGACCGAAAATCTGATATGGTTACTGCTTGTTGTTTAA
						
					

			
		

Sequences
Splice junction sequence	ACAAAATACTGGGTTTATATAACAAAGATCAAAATAGTTACCTCTTCATCTATCCCAAAGGAGG ACCGAAAATCTGATATGGTTACTGCTTGTTGTTTAAcatgcagaggatgttttttctgcagagt ctgaaatgcaagtatctccatcgagtagaaccacctcttcaaccacctgaatagaaatatcaga ataagctt
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CATGCAGAGGATGTTTTTTCTGCAGAGTCTGAAATGCAAGTATCTCCATCGAGTAGAACCACCT CTTCAACCACCTGAATAGAAATATCAGAATAAGCTTTGTAAAAAGAGTAACCTAAAGCAAACTA ACTAGCATAGATAGTTCTAGAAGCTGTGATGAGTACATCTATAATAACAGGTACTGTGCAGTTT ATCAATAACCCAACAAGAGGCAAATTAATTTCACTTTCATTCTGTGGATCGTTGCAATTACTGT ATGGGACAGGGAACTGAAAACTGATCATAAACTACCGAAGAATCAAAAGCTGCCCAGGTTTTTT CTATTTTCCTGGTACAGTCCATAAAAAAACAACCCCCCACCCCCACATTCCCATATAAATCACA ATGAAGGGATGAAATATGCATCAAAAATCAAAACTTCCCATCTATTAGTCATACTGGGTTCACA AAATATGTTTTTAATGGGTATATCTGCCGACCTGAAGTTTCATTTTAAATTGTACAAAAGCATT ATGTACTCATGTTACTAATACCAATATGCCATAAAATTTTGGATATTTTGATATGTAAGAAATT TTCATGCCATCTTCAATGCAGACGGCTGAAGTGGGTATACCCCTTATCAGCAGTAGCAAATCGC AATTCACATGTTCGATGCGTAGACAAATATACTCAATAGTTGTCTTATGTTCTAACCGTAGGGA TGAAAACAAGATCAAAGGTGATCTTACCATATTATATCATTTTTACATATCAGGAGTTGGATAT AAATATGAATTAGGATAGTTATAATTAGATCAGATAAGAATACAATTTATGAATATTTAACCAG ATATTAGACAGTGTAAAGTTCAGAGACAAATAACATCACAAATGAAACATTCAGCACACCTTTT ATATCTCTACTAACAGTATAGCTATGGAATTGGAATCCATCATGGTTTGGGTGTAACAATTGGT GGAAAGATATTTATAAACTATAAAACATTAATGCCTTTATAAGCAGCAAAGTCAATATGTGCAA GATTTAAAAACCCAGAAAATTTTGTTGTTTGTTAAGAAAAATAAGAGCAAAAAAACGTTCACAC CACAGAACAAACTCAAAATGCCCCATATGCATGAACATGGGGGAGAATTAGAGATCCCATGCCA CCACTCCTCAACTAAGAGACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATGAGTCGA CATCGAGGTGCCAAACAACTCCGTCGATAAGAGCTCTTGGGAGTCATCAGCCTGTTATCCCCGG CGTACCTTTGATCCGTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACT TTCGTCTCTGTTCGACCACCCCTCCTGCCTTTTTGTTTACATAATCCCCCGAACCCCTTGTTGC CACAAGGTTCAAAAAAAGGCTTTTAATAGTACAATCCTAGGACTCTATTGTTACCATAGAACCA TGTTGTACAGGGTCCATCTTGATTCTAATTGGAGCAGAATCCTTATTCTAATCGTAGTTACTTA GAAAATAACCGGTTTTCTATGTCTTTCCTTCTAAATGTCACATATTACAAATAAATTCCAATTT TAGTAATGCATAGTTGCATACTAGAAATCAGCACCAATGTTATAACAAAAAAAGGTATCTAATC AGTTTATATGGAAATAATATTAATAGATTCTCAAAAGGAATACATTTTGTAGTAACATATCTTA TAGTTTTTACCAGCATATTACTACTGAAATTAGTACACAAAGCTGTAGATTAGAAACTATGGTA ACATCTGAAATGGCATGTATTTGTGAAATGAAGGAATGCGAAAATGGTCAAAGTATAAAAAACT CAATGAGCATGCATGAAAAATAACAATTCACTTGACACGAAGATAAAACACAGCGTGTACAATC ATCTAATCAACAATTTATCATCAAGCTTGGTAATAACAGAATCAACCACACATCAGCAAACGGA ACTTCACAAATTTATCACAATTCAGTTAAAAGGAGGAGCCTTTAGGGCAGTAAGGTTCATTCTT TGATAGTGAGCGAGAAGATGATAATATCATTGCAAATAAATATTTCCTTTTTCCCAGTTAGAAA ATATAATTAATCTTTCCATGTTATTGACCACCATAACAGATAGTCAAAAAACAAATCAACTAAT TTATGTACTGGCAATAATAGGGGTGGTGGACCTCTGCCAACTGTATTACTAGAACTTTAGTATT CAACATAAAAATTACTACTAGTATACCATGTCACGATGTTTGGAAAGGAAAATGTACATACTAA CCTTTCTTGATCGCAATCGCATTGAAAAGGTAGGTGAAAATTCTCCATTCCTAGTAGAGGACAG ATAACATAATTCAATACAATAACTAATAAGTTACAGATTAACAAAACATATTCATTGATCAATA CATATATGCAGTTACAAGTTTAGAACTGGTGAGATATACAACAATCTAACAGTCTAACAGATGC ACAAGACATGGTATATATAATAGCAGTATTGCTATTTGTTTGTCAACTGATTTGCTTTATCTAA CAGTCACAATGCTTAGCCTAAATTTGCACCATATAAAAAGTACTACCACCGTTTTTTTAATATA ATTTTGTGCAAATATAAAAAAACTGACGACATGCTTAAAGAACATTTGATGATAAATCAAGTCA CATTAAAATAAATGATAATTACATATTTTTTTGAATAAGATAAATGGTCAAACGTATCTAAAAA AAGTCAACGGCGTCATATATTAAAAAATGGAGGGAGTACAACTTTTATATAAATCATTGCAACT GTAAGATTGCTTCTTTTTTTTCTATGTTTTGCATTGTCTTGGATGCGTTTGATTCAATTAAAAA ATCAGTGTTTGATGGAAACCTACATCTCCATGCTTCATAATTCTAAATTGTAAAAAAATAAGTT ATCTAAACGAATGTTTTGCATTTCCCTTGATGCTTTAATATCTATAAGGTATGAACACCAAGAA TTTTGATAGGGTTATGCATCTCATGAAATGATGCATGATTTTAGAACAAGTTAACTGTTAACAT TCCCATAACAAAGAAAATGGATGTTCGGCTTGAGACTCTGCAATACAAGAGTTTGTGTATACTA ACCTTTTCCTAGAAGTGTGGGCATCTTTGCATATCCTACTGTAGCCATTATCCTTGCCATCATC AGCAGCATCTATATTTTCCATATAAGTTGACCTATCAACATATGATGCCTTTTGAGACGTAGAG GGTTTACACTTACAGGAATCTTCCTCTTCACACAAGATCCCCTCATTATCTGTTGAAGTTTTTG GGTCGCCAATGCATGCACTTGTTTCCAAATGAGATACATCAACGCCTGCCTAATGTAAAGGAAA TAAAACACTTGCACAAAATACTGGGTTTATATAACAAAGATCAAAATAGTTACCTCTTCATCTA TCCCAAAGGAGGACCGAAAATCTGATATGGTTACTGCTTGTTGTTTAA

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.12391543

Conservation Information
Conserved circRNAs	NA
PMCS	0.12391543

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							16740471-16742680(-)
						
						Potential amino acid sequence
						
							MEILAFQTLQKKHPLHVKQQAVTISDFRSSFGIDEEAGVDVSHLETSACIGDPKTSTDNEGILC
EEEDSYAADDGKDNGYSRICKDAHTSRKRNGEFSPTFSMRLRSRKVSMYIFLSKHRDMVY*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	16740471-16742680(-)
Potential amino acid sequence	MEILAFQTLQKKHPLHVKQQAVTISDFRSSFGIDEEAGVDVSHLETSACIGDPKTSTDNEGILC EEEDSYAADDGKDNGYSRICKDAHTSRKRNGEFSPTFSMRLRSRKVSMYIFLSKHRDMVY*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os06g0487900_circ_g.5

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